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Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | mCepZeb1 | 140.42 Gbp | N/A | 71.5 GiB | |
PacBio HiFi (.bam) | mCepZeb1 | 142.44 Gbp | N/A | 576.3 GiB | |
Arima | mCepZeb1 | 277.67 Gbp | N/A | 147.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 17 June 2024.
Coverage based on genome size .
Last upload on 17 June 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mCepZeb1 | PacBio HiFi (.fq) | 140.42 Gbp | N/A | 71.5 GiB | |
PacBio HiFi (.bam) | 142.44 Gbp | N/A | 576.3 GiB | ||
Arima | 277.67 Gbp | N/A | 147.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 17 June 2024.
Coverage based on genome size .
Last upload on 17 June 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 8 July 2024
mCepZeb1.HiC.hap1.20240708.fasta.gz (0.9 GiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 8 July 2024
mCepZeb1.HiC.hap1.20240708.fasta.gz (0.9 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 125.21 Mbp | 2 | 147.50 Mbp |
20 | 6 | 115.75 Mbp | 5 | 129.94 Mbp |
30 | 9 | 99.44 Mbp | 7 | 128.39 Mbp |
40 | 13 | 88.32 Mbp | 10 | 112.16 Mbp |
50 | 17 | 79.49 Mbp | 14 | 95.80 Mbp |
60 | 22 | 66.50 Mbp | 18 | 79.49 Mbp |
70 | 29 | 31.29 Mbp | 22 | 66.50 Mbp |
80 | 50 | 9.41 Mbp | 28 | 49.17 Mbp |
90 | 118 | 3.05 Mbp | 82 | 3.36 Mbp |
100 | 792 | 7.59 Kbp | 746 | 7.59 Kbp |
1.000x | 792 | 3.44 Gbp | 746 | 3.44 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 8 July 2024
mCepZeb1.HiC.hap2.20240708.fasta.gz (1.0 GiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 8 July 2024
mCepZeb1.HiC.hap2.20240708.fasta.gz (1.0 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 4 | 128.30 Mbp | 3 | 147.00 Mbp |
20 | 8 | 95.17 Mbp | 7 | 128.30 Mbp |
30 | 13 | 80.11 Mbp | 10 | 115.64 Mbp |
40 | 18 | 65.90 Mbp | 15 | 91.70 Mbp |
50 | 26 | 52.63 Mbp | 20 | 76.24 Mbp |
60 | 36 | 28.76 Mbp | 26 | 58.08 Mbp |
70 | 64 | 9.60 Mbp | 42 | 12.11 Mbp |
80 | 134 | 4.51 Mbp | 109 | 4.58 Mbp |
90 | 280 | 2.04 Mbp | 252 | 2.10 Mbp |
100 | 942 | 16.40 Kbp | 911 | 16.40 Kbp |
1.000x | 942 | 4.34 Gbp | 911 | 4.34 Gbp |
NG based on genome size .
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.