Cepola macrophthalma

red bandfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fCepMac
  name: Cepola macrophthalma
  taxon_id: 334382
  common_name: red bandfish
  order:
    name: Perciformes
  family:
    name: Cepolidae
  individuals:
    - short_name: fCepMac1
      biosample_id: SAMEA112788985
      sex:
  genome_size: 797070000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fCepMac1 63.02 Gbp 79.06x 23.0 GiB
Arima fCepMac1 222.72 Gbp 279.42x 61.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.80 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fCepMac1 PacBio HiFi (.bam) 63.02 Gbp 79.06x 23.0 GiB
Arima 222.72 Gbp 279.42x 61.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.80 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 5 April 2024
fCepMac1.hap1.asm.20240405.fasta.gz (133.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 6.29 Mbp 2 41.01 Mbp
20 25 4.52 Mbp 5 24.59 Mbp
30 46 3.08 Mbp 9 22.86 Mbp
40 79 1.94 Mbp 13 19.87 Mbp
50 133 1.10 Mbp 17 18.84 Mbp
60 237 484.65 Kbp 22 12.53 Mbp
70 570 104.70 Kbp 145 174.04 Kbp
80 0 0
90 0 0
100 0 0
0.733x 1266 0.58 Gbp 754 0.58 Gbp
NG based on genome size 0.80 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 5 April 2024
fCepMac1.hap2.asm.20240405.fasta.gz (133.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 5.23 Mbp 2 42.55 Mbp
20 31 3.82 Mbp 5 24.94 Mbp
30 55 2.70 Mbp 9 23.11 Mbp
40 93 1.65 Mbp 13 20.19 Mbp
50 152 1.04 Mbp 17 18.77 Mbp
60 261 0.51 Mbp 22 12.13 Mbp
70 575 114.00 Kbp 138 204.00 Kbp
80 0 0
90 0 0
100 0 0
0.727x 1081 0.58 Gbp 556 0.58 Gbp
NG based on genome size 0.80 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 April 2024
fCepMac1.MT.20240405.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.