Chelidonichthys cuculus

red gurnard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fCheCuc
  name: Chelidonichthys cuculus
  taxon_id: 426094
  common_name: red gurnard
  order:
    name: Scorpaeniformes
  family:
    name: Triglidae
  individuals:
    - short_name: fCheCuc1
      biosample_id: SAMEA111562157
      sex:
  genome_size: 836190000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY-SA 2.0 Barney Livingston (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fCheCuc1 23.20 Gbp 27.75x 81.2 GiB
Arima fCheCuc1 361.95 Gbp 432.86x 108.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.84 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fCheCuc1 PacBio HiFi (.bam) 23.20 Gbp 27.75x 81.2 GiB
Arima 361.95 Gbp 432.86x 108.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.84 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 5 April 2024
fCheCuc1.hap1.asm.20240405.fasta.gz (188.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 16 4.06 Mbp 2 33.43 Mbp
20 39 3.24 Mbp 5 31.37 Mbp
30 70 2.21 Mbp 8 29.35 Mbp
40 116 1.53 Mbp 11 27.57 Mbp
50 180 1.09 Mbp 14 24.18 Mbp
60 274 0.71 Mbp 17 22.99 Mbp
70 427 412.21 Kbp 21 19.71 Mbp
80 1171 15.01 Kbp 429 16.51 Kbp
90 0 0
100 0 0
0.801x 1315 0.67 Gbp 582 0.67 Gbp
NG based on genome size 0.84 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 5 April 2024
fCheCuc1.hap2.asm.20240405.fasta.gz (183.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 17 3.96 Mbp 3 31.54 Mbp
20 43 2.72 Mbp 6 29.16 Mbp
30 78 2.06 Mbp 9 28.65 Mbp
40 125 1.51 Mbp 12 27.50 Mbp
50 190 1.07 Mbp 15 25.03 Mbp
60 292 0.65 Mbp 18 23.33 Mbp
70 464 346.43 Kbp 22 19.34 Mbp
80 0 0
90 0 0
100 0 0
0.776x 1147 0.65 Gbp 413 0.65 Gbp
NG based on genome size 0.84 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 April 2024
fCheCuc1.MT.20240405.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.