Chelidonichthys lucerna

Tub gurnard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fCheLuc
  name: Chelidonichthys lucerna
  taxon_id: 2576622
  common_name: Tub gurnard
  order:
    name: Scorpaeniformes
  family:
    name: Triglidae
  individuals:
    - short_name: fCheLuc1
      biosample_id: SAMEA112765707
      sex:
  genome_size: 836190000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fCheLuc1 77.58 Gbp 92.78x 29.8 GiB
Arima fCheLuc1 328.23 Gbp 392.53x 97.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.84 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fCheLuc1 PacBio HiFi (.bam) 77.58 Gbp 92.78x 29.8 GiB
Arima 328.23 Gbp 392.53x 97.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.84 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 6 April 2024
fCheLuc1.hap1.asm.20240406.fasta.gz (183.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 9 8.22 Mbp 2 36.43 Mbp
20 21 5.72 Mbp 5 30.46 Mbp
30 39 3.98 Mbp 8 29.45 Mbp
40 63 2.97 Mbp 10 27.99 Mbp
50 95 2.13 Mbp 14 24.64 Mbp
60 143 1.44 Mbp 17 22.76 Mbp
70 217 0.84 Mbp 21 19.05 Mbp
80 0 0
90 0 0
100 0 0
0.775x 837 0.65 Gbp 529 0.65 Gbp
NG based on genome size 0.84 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 6 April 2024
fCheLuc1.hap2.asm.20240406.fasta.gz (183.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 8 7.47 Mbp 3 31.22 Mbp
20 21 6.17 Mbp 6 29.87 Mbp
30 38 4.12 Mbp 9 28.37 Mbp
40 60 3.35 Mbp 12 27.26 Mbp
50 90 2.39 Mbp 15 24.43 Mbp
60 133 1.54 Mbp 18 23.06 Mbp
70 204 0.84 Mbp 22 19.27 Mbp
80 0 0
90 0 0
100 0 0
0.780x 652 0.65 Gbp 354 0.65 Gbp
NG based on genome size 0.84 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 6 April 2024
fCheLuc1.MT.20240406.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.