Choloepus didactylus
southern two-toed sloth
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | mChoDid1: GCA_015220235.1 | mChoDid1: GCA_015220265.1 |
ENA | mChoDid1: GCA_015220235.1 | mChoDid1: GCA_015220265.1 |
UCSC Genome Browser | mChoDid1: GCA_015220235.1 | mChoDid1: GCA_015220265.1 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 3.0 Hans Hillewaert (wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 3.40 Gbp.
Last upload on 11 January 2019.
Coverage based on genome size 3.40 Gbp.
Last upload on 11 January 2019.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mChoDid1 | PacBio CLR | 193.17 Gbp | 56.81x | 339.3 GiB | |
10x | 342.78 Gbp | 100.82x | 159.9 GiB | ||
Bionano | N/A | 251.42x | 1.5 GiB | ||
Arima | 297.29 Gbp | 87.44x | 153.7 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 3.40 Gbp.
Last upload on 11 January 2019.
Coverage based on genome size 3.40 Gbp.
Last upload on 11 January 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_berlinSanger_vgp_1.6 from 14 September 2020
mChoDid1.pri.asm.20200914.fasta.gz (0.9 GiB)
Quality: not computed
Version assembly_berlinSanger_vgp_1.6 from 14 September 2020
mChoDid1.pri.asm.20200914.fasta.gz (0.9 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 6 | 49.21 Mbp | 1 | 248.08 Mbp |
20 | 13 | 38.79 Mbp | 2 | 223.23 Mbp |
30 | 23 | 32.32 Mbp | 4 | 193.84 Mbp |
40 | 35 | 24.60 Mbp | 6 | 156.66 Mbp |
50 | 51 | 19.04 Mbp | 8 | 146.18 Mbp |
60 | 75 | 10.92 Mbp | 11 | 102.98 Mbp |
70 | 117 | 5.42 Mbp | 14 | 90.81 Mbp |
80 | 215 | 2.09 Mbp | 18 | 77.03 Mbp |
90 | 642 | 282.53 Kbp | 25 | 26.63 Mbp |
100 | 0 | 0 | ||
0.922x | 1385 | 3.13 Gbp | 145 | 3.21 Gbp |
NG based on genome size 3.40 Gbp.
Individual 1 Alternate Assembly
Version assembly_berlinSanger_vgp_1.6 from 14 September 2020
mChoDid1.alt.asm.20200914.fasta.gz (0.9 GiB)
Quality: not computed
Version assembly_berlinSanger_vgp_1.6 from 14 September 2020
mChoDid1.alt.asm.20200914.fasta.gz (0.9 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 171 | 1.57 Mbp | 171 | 1.57 Mbp |
20 | 431 | 1.13 Mbp | 431 | 1.13 Mbp |
30 | 782 | 0.85 Mbp | 782 | 0.85 Mbp |
40 | 1248 | 0.63 Mbp | 1248 | 0.63 Mbp |
50 | 1880 | 459.77 Kbp | 1880 | 461.73 Kbp |
60 | 2773 | 311.30 Kbp | 2770 | 312.67 Kbp |
70 | 4103 | 211.53 Kbp | 4096 | 212.10 Kbp |
80 | 6073 | 139.04 Kbp | 6060 | 139.40 Kbp |
90 | 9338 | 73.00 Kbp | 9316 | 73.22 Kbp |
100 | 0 | 0 | ||
0.935x | 12050 | 3.18 Gbp | 11980 | 3.18 Gbp |
NG based on genome size 3.40 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mChoDid1.MT.20190820.fasta.gz (4.9 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 20 August 2019
mChoDid1.MT.20190820.fasta.gz (4.9 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.