Columba palumbus
Wood Pigeon
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | bColPal1 | 40.97 Gbp | 28.40x | 12.1 GiB | |
Arima | bColPal1 | 48.77 Gbp | 33.81x | 14.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.44 Gbp.
Last upload on 1 April 2024.
Coverage based on genome size 1.44 Gbp.
Last upload on 1 April 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bColPal1 | PacBio HiFi (.bam) | 40.97 Gbp | 28.40x | 12.1 GiB | |
Arima | 48.77 Gbp | 33.81x | 14.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.44 Gbp.
Last upload on 1 April 2024.
Coverage based on genome size 1.44 Gbp.
Last upload on 1 April 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 10 May 2024
bColPal1.pri.asm.20240510.fasta.gz (366.4 MiB)
Quality: not computed
Version assembly_cambridge from 10 May 2024
bColPal1.pri.asm.20240510.fasta.gz (366.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 11 | 11.06 Mbp | 1 | 214.68 Mbp |
20 | 28 | 7.29 Mbp | 2 | 165.44 Mbp |
30 | 52 | 5.37 Mbp | 3 | 125.11 Mbp |
40 | 82 | 4.23 Mbp | 4 | 83.31 Mbp |
50 | 122 | 3.24 Mbp | 6 | 72.55 Mbp |
60 | 172 | 2.43 Mbp | 10 | 27.48 Mbp |
70 | 244 | 1.70 Mbp | 16 | 21.21 Mbp |
80 | 352 | 1.01 Mbp | 33 | 3.63 Mbp |
90 | 606 | 289.00 Kbp | 198 | 373.00 Kbp |
100 | 0 | 0 | ||
0.945x | 1265 | 1.36 Gbp | 769 | 1.36 Gbp |
NG based on genome size 1.44 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 10 May 2024
bColPal1.alt.asm.20240510.fasta.gz (447.5 MiB)
Quality: not computed
Version assembly_cambridge from 10 May 2024
bColPal1.alt.asm.20240510.fasta.gz (447.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 27 | 4.18 Mbp | 27 | 4.18 Mbp |
20 | 66 | 3.24 Mbp | 66 | 3.24 Mbp |
30 | 115 | 2.60 Mbp | 115 | 2.60 Mbp |
40 | 178 | 2.08 Mbp | 178 | 2.08 Mbp |
50 | 255 | 1.68 Mbp | 255 | 1.68 Mbp |
60 | 350 | 1.36 Mbp | 350 | 1.36 Mbp |
70 | 471 | 1.02 Mbp | 471 | 1.02 Mbp |
80 | 635 | 0.75 Mbp | 635 | 0.75 Mbp |
90 | 868 | 0.51 Mbp | 868 | 0.51 Mbp |
100 | 1226 | 316.49 Kbp | 1226 | 316.49 Kbp |
1.264x | 6573 | 1.82 Gbp | 6573 | 1.82 Gbp |
NG based on genome size 1.44 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 10 May 2024
bColPal1.MT.20240510.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_cambridge from 10 May 2024
bColPal1.MT.20240510.fasta.gz (5.4 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.