Cyanistes caeruleus

blue tit

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bCyaCae
  name: Cyanistes caeruleus
  taxon_id: 156563
  common_name: blue tit
  order:
    name: Passeriformes
  family:
    name: Paridae
  individuals:
    - short_name: bCyaCae1
      biosample_id: SAMEA115433025
      sex: male
  genome_size: 1437660000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bCyaCae1 89.06 Gbp 61.95x 31.4 GiB
Arima bCyaCae1 121.30 Gbp 84.37x 32.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.44 Gbp.
Last upload on 20 July 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bCyaCae1 PacBio HiFi (.bam) 89.06 Gbp 61.95x 31.4 GiB
Arima 121.30 Gbp 84.37x 32.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.44 Gbp.
Last upload on 20 July 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 22 July 2024
bCyaCae1.hap1.asm.20240722.fasta.gz (336.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 7.94 Mbp 1 153.05 Mbp
20 36 6.14 Mbp 3 114.30 Mbp
30 62 4.96 Mbp 4 80.20 Mbp
40 95 3.91 Mbp 6 74.86 Mbp
50 137 3.06 Mbp 8 39.51 Mbp
60 191 2.38 Mbp 13 21.95 Mbp
70 263 1.65 Mbp 22 10.86 Mbp
80 388 0.74 Mbp 57 2.04 Mbp
90 0 0
100 0 0
0.866x 1014 1.24 Gbp 586 1.24 Gbp
NG based on genome size 1.44 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 22 July 2024
bCyaCae1.hap2.asm.20240722.fasta.gz (331.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 14 8.80 Mbp 1 152.96 Mbp
20 35 6.16 Mbp 3 115.45 Mbp
30 61 4.93 Mbp 4 79.59 Mbp
40 96 3.41 Mbp 6 72.71 Mbp
50 142 2.81 Mbp 8 40.64 Mbp
60 200 2.11 Mbp 13 21.70 Mbp
70 281 1.44 Mbp 22 10.54 Mbp
80 437 0.55 Mbp 66 1.16 Mbp
90 0 0
100 0 0
0.851x 888 1.22 Gbp 438 1.22 Gbp
NG based on genome size 1.44 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 22 July 2024
bCyaCae1.MT.20240722.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.