Fulica atra

Eurasian coot

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bFulAtr
  name: Fulica atra
  taxon_id: 9121
  common_name: Eurasian coot
  order:
    name: Gruiformes
  family:
    name: Rallidae
  individuals:
    - short_name: bFulAtr2
      biosample_id: SAMEA113398836
      sex: female
  genome_size: 1359420000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bFulAtr2 54.00 Gbp 39.73x 15.9 GiB
Arima bFulAtr2 102.56 Gbp 75.44x 29.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.36 Gbp.
Last upload on 8 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bFulAtr2 PacBio HiFi (.bam) 54.00 Gbp 39.73x 15.9 GiB
Arima 102.56 Gbp 75.44x 29.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.36 Gbp.
Last upload on 8 March 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 12 March 2024
bFulAtr2.hap1.asm.20240312.fasta.gz (372.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 8.85 Mbp 1 214.12 Mbp
20 30 6.53 Mbp 2 163.01 Mbp
30 54 5.14 Mbp 3 122.85 Mbp
40 82 4.24 Mbp 4 91.71 Mbp
50 118 3.40 Mbp 6 53.08 Mbp
60 164 2.53 Mbp 10 23.83 Mbp
70 231 1.68 Mbp 16 19.57 Mbp
80 335 1.05 Mbp 27 7.12 Mbp
90 530 437.51 Kbp 102 0.70 Mbp
100 1565 63.73 Kbp 1011 66.04 Kbp
1.059x 4443 1.44 Gbp 3855 1.44 Gbp
NG based on genome size 1.36 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 12 March 2024
bFulAtr2.hap2.asm.20240312.fasta.gz (351.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 10.39 Mbp 1 213.91 Mbp
20 29 6.31 Mbp 2 162.10 Mbp
30 53 4.88 Mbp 3 123.27 Mbp
40 84 3.93 Mbp 4 91.63 Mbp
50 122 3.16 Mbp 6 32.79 Mbp
60 170 2.36 Mbp 11 22.73 Mbp
70 239 1.64 Mbp 18 16.17 Mbp
80 352 0.90 Mbp 34 4.97 Mbp
90 683 152.06 Kbp 219 198.07 Kbp
100 0 0
0.944x 1769 1.28 Gbp 1220 1.28 Gbp
NG based on genome size 1.36 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 12 March 2024
bFulAtr2.MT.20240312.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.