Fulica atra
Eurasian coot
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | bFulAtr2 | 54.00 Gbp | 39.73x | 15.9 GiB | |
Arima | bFulAtr2 | 102.56 Gbp | 75.44x | 29.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.36 Gbp.
Last upload on 8 March 2024.
Coverage based on genome size 1.36 Gbp.
Last upload on 8 March 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bFulAtr2 | PacBio HiFi (.bam) | 54.00 Gbp | 39.73x | 15.9 GiB | |
Arima | 102.56 Gbp | 75.44x | 29.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.36 Gbp.
Last upload on 8 March 2024.
Coverage based on genome size 1.36 Gbp.
Last upload on 8 March 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 12 March 2024
bFulAtr2.hap1.asm.20240312.fasta.gz (372.6 MiB)
Quality: not computed
Version assembly_cambridge from 12 March 2024
bFulAtr2.hap1.asm.20240312.fasta.gz (372.6 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 13 | 8.85 Mbp | 1 | 214.12 Mbp |
20 | 30 | 6.53 Mbp | 2 | 163.01 Mbp |
30 | 54 | 5.14 Mbp | 3 | 122.85 Mbp |
40 | 82 | 4.24 Mbp | 4 | 91.71 Mbp |
50 | 118 | 3.40 Mbp | 6 | 53.08 Mbp |
60 | 164 | 2.53 Mbp | 10 | 23.83 Mbp |
70 | 231 | 1.68 Mbp | 16 | 19.57 Mbp |
80 | 335 | 1.05 Mbp | 27 | 7.12 Mbp |
90 | 530 | 437.51 Kbp | 102 | 0.70 Mbp |
100 | 1565 | 63.73 Kbp | 1011 | 66.04 Kbp |
1.059x | 4443 | 1.44 Gbp | 3855 | 1.44 Gbp |
NG based on genome size 1.36 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 12 March 2024
bFulAtr2.hap2.asm.20240312.fasta.gz (351.7 MiB)
Quality: not computed
Version assembly_cambridge from 12 March 2024
bFulAtr2.hap2.asm.20240312.fasta.gz (351.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 11 | 10.39 Mbp | 1 | 213.91 Mbp |
20 | 29 | 6.31 Mbp | 2 | 162.10 Mbp |
30 | 53 | 4.88 Mbp | 3 | 123.27 Mbp |
40 | 84 | 3.93 Mbp | 4 | 91.63 Mbp |
50 | 122 | 3.16 Mbp | 6 | 32.79 Mbp |
60 | 170 | 2.36 Mbp | 11 | 22.73 Mbp |
70 | 239 | 1.64 Mbp | 18 | 16.17 Mbp |
80 | 352 | 0.90 Mbp | 34 | 4.97 Mbp |
90 | 683 | 152.06 Kbp | 219 | 198.07 Kbp |
100 | 0 | 0 | ||
0.944x | 1769 | 1.28 Gbp | 1220 | 1.28 Gbp |
NG based on genome size 1.36 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 12 March 2024
bFulAtr2.MT.20240312.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_cambridge from 12 March 2024
bFulAtr2.MT.20240312.fasta.gz (5.3 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.