Haematopus ostralegus
Eurasian oystercatcher
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | bHaeOst1 | 90.47 Gbp | 63.80x | 30.6 GiB | |
Arima | bHaeOst1 | 71.31 Gbp | 50.29x | 19.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.42 Gbp.
Last upload on 20 July 2024.
Coverage based on genome size 1.42 Gbp.
Last upload on 20 July 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bHaeOst1 | PacBio HiFi (.bam) | 90.47 Gbp | 63.80x | 30.6 GiB | |
Arima | 71.31 Gbp | 50.29x | 19.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.42 Gbp.
Last upload on 20 July 2024.
Coverage based on genome size 1.42 Gbp.
Last upload on 20 July 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 20 July 2024
bHaeOst1.hap1.asm.20240720.fasta.gz (313.5 MiB)
Quality: not computed
Version assembly_cambridge from 20 July 2024
bHaeOst1.hap1.asm.20240720.fasta.gz (313.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 10 | 12.54 Mbp | 1 | 220.60 Mbp |
20 | 24 | 9.04 Mbp | 2 | 168.17 Mbp |
30 | 42 | 6.92 Mbp | 3 | 133.08 Mbp |
40 | 65 | 5.52 Mbp | 4 | 88.32 Mbp |
50 | 94 | 4.22 Mbp | 6 | 85.60 Mbp |
60 | 133 | 3.18 Mbp | 7 | 73.58 Mbp |
70 | 187 | 2.24 Mbp | 12 | 24.70 Mbp |
80 | 267 | 1.40 Mbp | 19 | 15.08 Mbp |
90 | 468 | 286.68 Kbp | 71 | 0.52 Mbp |
100 | 0 | 0 | ||
0.921x | 781 | 1.31 Gbp | 338 | 1.31 Gbp |
NG based on genome size 1.42 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 20 July 2024
bHaeOst1.hap2.asm.20240720.fasta.gz (312.7 MiB)
Quality: not computed
Version assembly_cambridge from 20 July 2024
bHaeOst1.hap2.asm.20240720.fasta.gz (312.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 9 | 12.88 Mbp | 1 | 220.43 Mbp |
20 | 23 | 8.44 Mbp | 2 | 169.32 Mbp |
30 | 42 | 6.96 Mbp | 3 | 131.39 Mbp |
40 | 65 | 5.48 Mbp | 4 | 88.12 Mbp |
50 | 93 | 4.36 Mbp | 6 | 85.32 Mbp |
60 | 130 | 3.40 Mbp | 7 | 73.54 Mbp |
70 | 184 | 2.18 Mbp | 12 | 24.79 Mbp |
80 | 265 | 1.33 Mbp | 19 | 14.05 Mbp |
90 | 512 | 154.00 Kbp | 104 | 207.00 Kbp |
100 | 0 | 0 | ||
0.911x | 817 | 1.29 Gbp | 378 | 1.29 Gbp |
NG based on genome size 1.42 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 20 July 2024
bHaeOst1.MT.20240720.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_cambridge from 20 July 2024
bHaeOst1.MT.20240720.fasta.gz (5.4 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.