Hylobates_pileatus

Hylobates pileatus

Pileated Gibbon

Included in the T2T.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -

metadata.yaml (view) (edit on github)
species: short_name: mHylPil name: Hylobates pileatus taxon_id: 9589 common_name: Pileated Gibbon order: name: Primates family: name: Hylobatidae individuals: - short_name: mHylPil1 name: Domino biosample_id: null alt_ids: - HP120 sex: male birth_date: null birth_location: null birth_type: null mother: null father: null description: > Domino is a male Pileated Gibbon and his genome is being sequenced as part of a T2T effort. provider: Lucia Carbone, Oregon Health & Science University samples: - sample_id: null sample_type: null tissue: null isolation_source: null age: null sample_biosample_id: null collection_date: null provider: Lucia Carbone, Oregon Health & Science University project: [ t2t ] - short_name: mHylPil2 name: Iszie biosample_id: null alt_ids: - HP185 sex: female birth_date: null birth_location: null birth_type: null mother: null father: null description: > Iszie is a female Pileated Gibbon and her genome is being sequenced as part of a T2T effort. provider: Lucia Carbone, Oregon Health & Science University samples: - sample_id: null sample_type: null tissue: null isolation_source: null age: null sample_biosample_id: null collection_date: null provider: Lucia Carbone, Oregon Health & Science University project: [ t2t ] genome_size: 3170000000 genome_size_method: Genomes on a Tree (GoaT) estimate project: [ t2t ]

species:
  short_name: mHylPil
  name: Hylobates pileatus
  taxon_id: 9589
  common_name: Pileated Gibbon
  order:
    name: Primates
  family:
    name: Hylobatidae
  individuals:
  -
    short_name: mHylPil1
    name: Domino
    biosample_id: null
    alt_ids:
    - HP120
    sex: male
    birth_date: null
    birth_location: null
    birth_type: null
    mother: null
    father: null
    description: >
      Domino is a male Pileated Gibbon and his genome is being
      sequenced as part of a T2T effort.
    provider: Lucia Carbone, Oregon Health & Science University
    samples:
    -
      sample_id: null
      sample_type: null
      tissue: null
      isolation_source: null
      age: null
      sample_biosample_id: null
      collection_date: null
      provider: Lucia Carbone, Oregon Health & Science University
    project: [ t2t ]
  -
    short_name: mHylPil2
    name: Iszie
    biosample_id: null
    alt_ids:
    - HP185
    sex: female
    birth_date: null
    birth_location: null
    birth_type: null
    mother: null
    father: null
    description: >
      Iszie is a female Pileated Gibbon and her genome is being
      sequenced as part of a T2T effort.
    provider: Lucia Carbone, Oregon Health & Science University
    samples:
    -
      sample_id: null
      sample_type: null
      tissue: null
      isolation_source: null
      age: null
      sample_biosample_id: null
      collection_date: null
      provider: Lucia Carbone, Oregon Health & Science University
    project: [ t2t ]
  genome_size: 3170000000
  genome_size_method: Genomes on a Tree (GoaT) estimate
  project: [ t2t ]

No image

Datatype	Individual	Bases	Coverage	Bytes
PacBio HiFi (.fq)	mHylPil1	37.11 Gbp	11.71x	31.1 GiB
PacBio HiFi (.fq)	mHylPil2	142.39 Gbp	44.92x	52.9 GiB
PacBio HiFi (.bam)	mHylPil1	101.74 Gbp	32.09x	341.6 GiB
PacBio HiFi (.bam)	mHylPil2	156.45 Gbp	49.35x	525.2 GiB
Oxford Nanopore Simplex	mHylPil1	336.65 Gbp	106.20x	187.6 GiB
Oxford Nanopore Simplex	mHylPil2	516.41 Gbp	162.91x	275.1 GiB
Arima	mHylPil2	317.89 Gbp	100.28x	153.2 GiB
Dovetail Genomics	mHylPil1	79.11 Gbp	24.95x	39.9 GiB
Illumina	mHylPil1	191.71 Gbp	60.48x	93.7 GiB
Illumina	mHylPil2	122.69 Gbp	38.70x	51.4 GiB

Bases and Coverage are approximate.
Coverage based on genome size 3.17 Gbp.
Last upload on 3 September 2025.

Individual	Datatype	Bases	Coverage	Bytes
mHylPil1	PacBio HiFi (.fq)	37.11 Gbp	11.71x	31.1 GiB
	PacBio HiFi (.bam)	101.74 Gbp	32.09x	341.6 GiB
	Oxford Nanopore Simplex	336.65 Gbp	106.20x	187.6 GiB
	Dovetail Genomics	79.11 Gbp	24.95x	39.9 GiB
	Illumina	191.71 Gbp	60.48x	93.7 GiB
mHylPil2	PacBio HiFi (.fq)	142.39 Gbp	44.92x	52.9 GiB
	PacBio HiFi (.bam)	156.45 Gbp	49.35x	525.2 GiB
	Oxford Nanopore Simplex	516.41 Gbp	162.91x	275.1 GiB
	Arima	317.89 Gbp	100.28x	153.2 GiB
	Illumina	122.69 Gbp	38.70x	51.4 GiB

Bases and Coverage are approximate.
Coverage based on genome size 3.17 Gbp.
Last upload on 3 September 2025.

Individual 1 Haplotype 1 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mHylPil1.HiC.hap1.20250404.fasta.gz (659.1 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	2	191.67 Mbp	2	191.67 Mbp
20	3	185.25 Mbp	3	185.25 Mbp
30	5	163.57 Mbp	5	163.57 Mbp
40	6	160.78 Mbp	6	160.78 Mbp
50	8	118.24 Mbp	8	131.57 Mbp
60	11	111.43 Mbp	10	118.24 Mbp
70	13	91.74 Mbp	13	111.43 Mbp
80	17	66.52 Mbp	15	94.88 Mbp
90	21	53.03 Mbp	18	85.98 Mbp
100	44	229.64 Kbp	34	229.64 Kbp
1.000x	44	2.71 Gbp	34	2.71 Gbp

NG based on genome size 3.17 Gbp.

Individual 1 Haplotype 2 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mHylPil1.HiC.hap2.20250404.fasta.gz (694.1 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	2	191.28 Mbp	2	191.28 Mbp
20	3	184.92 Mbp	3	184.92 Mbp
30	5	163.55 Mbp	5	163.55 Mbp
40	7	144.70 Mbp	7	152.20 Mbp
50	9	114.18 Mbp	9	131.50 Mbp
60	11	109.52 Mbp	11	122.82 Mbp
70	14	91.16 Mbp	13	114.18 Mbp
80	18	75.71 Mbp	16	109.52 Mbp
90	23	52.93 Mbp	19	83.44 Mbp
100	32	234.03 Kbp	23	38.21 Mbp
1.000x	32	2.85 Gbp	23	2.85 Gbp

NG based on genome size 3.17 Gbp.

Individual 2 Haplotype 1 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mHylPil2.HiC.hap1.20250404.fasta.gz (692.0 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	2	185.16 Mbp	2	191.32 Mbp
20	4	163.58 Mbp	3	185.16 Mbp
30	5	160.45 Mbp	5	163.58 Mbp
40	7	144.17 Mbp	7	144.17 Mbp
50	9	131.36 Mbp	9	131.36 Mbp
60	12	118.41 Mbp	11	125.36 Mbp
70	14	112.57 Mbp	13	115.54 Mbp
80	17	93.37 Mbp	16	110.80 Mbp
90	20	60.68 Mbp	19	88.50 Mbp
100	27	318.45 Kbp	22	59.49 Mbp
1.000x	27	2.84 Gbp	22	2.84 Gbp

NG based on genome size 3.17 Gbp.

Individual 2 Haplotype 2 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mHylPil2.HiC.hap2.20250404.fasta.gz (692.7 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	2	185.32 Mbp	2	191.70 Mbp
20	4	162.90 Mbp	3	185.32 Mbp
30	5	160.79 Mbp	5	162.90 Mbp
40	7	144.71 Mbp	7	144.71 Mbp
50	9	131.44 Mbp	9	131.44 Mbp
60	12	118.19 Mbp	11	123.82 Mbp
70	14	112.10 Mbp	13	114.17 Mbp
80	17	95.69 Mbp	16	109.57 Mbp
90	20	83.33 Mbp	19	89.05 Mbp
100	25	130.95 Kbp	23	130.95 Kbp
1.000x	25	2.84 Gbp	23	2.84 Gbp

NG based on genome size 3.17 Gbp.

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.