Larus glaucescens

glaucous-winged gull

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bLarGla
  name: Larus glaucescens
  taxon_id: 119606
  common_name: glaucous-winged gull
  order:
    name: Charadriiformes
  family:
    name: Laridae
  individuals:
    - short_name: bLarGla1
      biosample_id: SAMEA115348653
      sex: female
  genome_size: 1432770000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bLarGla1 241.36 Gbp 168.46x 80.8 GiB
Arima bLarGla1 64.87 Gbp 45.28x 18.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 30 September 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bLarGla1 PacBio HiFi (.bam) 241.36 Gbp 168.46x 80.8 GiB
Arima 64.87 Gbp 45.28x 18.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 30 September 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 20 July 2024
bLarGla1.hap1.asm.20240720.fasta.gz (318.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 9.81 Mbp 1 217.43 Mbp
20 29 7.42 Mbp 2 167.31 Mbp
30 51 5.94 Mbp 3 121.06 Mbp
40 78 4.73 Mbp 4 94.74 Mbp
50 114 3.49 Mbp 6 83.61 Mbp
60 160 2.81 Mbp 8 58.30 Mbp
70 219 2.10 Mbp 10 49.47 Mbp
80 303 1.38 Mbp 18 9.73 Mbp
90 440 0.76 Mbp 67 1.18 Mbp
100 990 47.50 Kbp 513 52.75 Kbp
1.004x 1248 1.44 Gbp 763 1.44 Gbp
NG based on genome size 1.43 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 20 July 2024
bLarGla1.hap2.asm.20240720.fasta.gz (288.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 9.89 Mbp 1 217.02 Mbp
20 29 7.00 Mbp 2 167.09 Mbp
30 52 5.30 Mbp 3 129.90 Mbp
40 83 4.24 Mbp 4 94.72 Mbp
50 122 3.21 Mbp 6 71.79 Mbp
60 172 2.45 Mbp 8 57.22 Mbp
70 242 1.66 Mbp 13 17.20 Mbp
80 375 0.65 Mbp 38 1.67 Mbp
90 0 0
100 0 0
0.865x 1151 1.24 Gbp 706 1.24 Gbp
NG based on genome size 1.43 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 20 July 2024
bLarGla1.MT.20240720.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.