Larus marinus

Great Black-backed Gull

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bLarMar
  name: Larus marinus
  taxon_id: 8912
  common_name: Great Black-backed Gull
  order:
    name: Charadriiformes
  family:
    name: Laridae
  individuals:
    - short_name: bLarMar3
      biosample_id: SAMEA115168457
      sex: female
  genome_size: 1432770000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bLarMar3 95.88 Gbp 66.92x 35.0 GiB
Arima bLarMar3 113.89 Gbp 79.49x 31.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 23 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bLarMar3 PacBio HiFi (.bam) 95.88 Gbp 66.92x 35.0 GiB
Arima 113.89 Gbp 79.49x 31.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 23 May 2024.
Assemblies
Individual 3 Primary Assembly
Version assembly_cambridge from 31 May 2024
bLarMar3.pri.asm.20240531.fasta.gz (339.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 11.75 Mbp 1 218.68 Mbp
20 25 9.07 Mbp 2 167.81 Mbp
30 43 7.07 Mbp 3 129.84 Mbp
40 65 6.04 Mbp 4 96.96 Mbp
50 91 5.07 Mbp 6 75.83 Mbp
60 122 3.89 Mbp 8 59.78 Mbp
70 163 3.09 Mbp 11 30.42 Mbp
80 216 2.25 Mbp 17 13.59 Mbp
90 302 1.18 Mbp 38 3.08 Mbp
100 0 0
0.978x 736 1.40 Gbp 349 1.40 Gbp
NG based on genome size 1.43 Gbp.
Individual 3 Alternate Assembly
Version assembly_cambridge from 31 May 2024
bLarMar3.alt.asm.20240531.fasta.gz (322.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 67 1.40 Mbp 67 1.40 Mbp
20 199 0.89 Mbp 199 0.89 Mbp
30 388 0.65 Mbp 388 0.65 Mbp
40 648 474.72 Kbp 648 474.72 Kbp
50 1000 352.45 Kbp 1000 352.45 Kbp
60 1483 248.10 Kbp 1483 248.10 Kbp
70 2209 155.53 Kbp 2209 155.53 Kbp
80 3543 72.57 Kbp 3543 72.57 Kbp
90 6848 25.35 Kbp 6848 25.35 Kbp
100 0 0
0.925x 8647 1.32 Gbp 8647 1.32 Gbp
NG based on genome size 1.43 Gbp.
Individual 3 Mitochondrial Assembly
Version assembly_MT_cambridge from 31 May 2024
bLarMar3.MT.20240531.fasta.gz (5.5 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.