Lissotriton helveticus

palmate newt

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: aLisHel
  name: Lissotriton helveticus
  taxon_id: 256425
  common_name: palmate newt
  order:
    name: Caudata
  family:
    name: Salamandridae
  individuals:
    - short_name: aLisHel1
      biosample_id: SAMEA110240860
      sex: male
  genome_size: 25760520000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) aLisHel1 1045.96 Gbp 40.60x 409.8 GiB
Arima aLisHel1 960.52 Gbp 37.29x 288.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 25.76 Gbp.
Last upload on 23 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
aLisHel1 PacBio HiFi (.bam) 1045.96 Gbp 40.60x 409.8 GiB
Arima 960.52 Gbp 37.29x 288.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 25.76 Gbp.
Last upload on 23 December 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 30 December 2023
aLisHel1.pri.asm.20231230.fasta.gz (6.6 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 113 17.26 Mbp 1 2.67 Gbp
20 288 12.95 Mbp 2 2.60 Gbp
30 508 10.42 Mbp 3 2.56 Gbp
40 780 8.58 Mbp 5 2.15 Gbp
50 1109 7.09 Mbp 6 2.11 Gbp
60 1524 5.46 Mbp 7 1.98 Gbp
70 2071 4.05 Mbp 8 1.73 Gbp
80 2860 2.61 Mbp 10 1.23 Gbp
90 4352 0.99 Mbp 64 4.82 Mbp
100 0 0
0.937x 7442 24.15 Gbp 2081 24.15 Gbp
NG based on genome size 25.76 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 30 December 2023
aLisHel1.alt.asm.20231230.fasta.gz (5.2 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 656 2.79 Mbp 656 2.79 Mbp
20 1865 1.68 Mbp 1865 1.68 Mbp
30 3908 0.94 Mbp 3908 0.94 Mbp
40 8375 323.44 Kbp 8375 323.44 Kbp
50 32979 63.70 Kbp 32979 63.70 Kbp
60 85749 39.57 Kbp 85749 39.57 Kbp
70 162414 28.54 Kbp 162414 28.54 Kbp
80 0 0
90 0 0
100 0 0
0.760x 233624 19.57 Gbp 233624 19.57 Gbp
NG based on genome size 25.76 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 30 December 2023
aLisHel1.MT.20231230.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.