Mergus serrator

Red breaster merganser

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bMerSer
  name: Mergus serrator
  taxon_id: 8879
  common_name: Red breaster merganser
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bMerSer1
      biosample_id: SAMEA113398848
      sex: male
  genome_size: 1956000000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bMerSer1 55.44 Gbp 28.34x 16.1 GiB
Arima bMerSer1 94.27 Gbp 48.20x 26.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.96 Gbp.
Last upload on 17 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bMerSer1 PacBio HiFi (.bam) 55.44 Gbp 28.34x 16.1 GiB
Arima 94.27 Gbp 48.20x 26.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.96 Gbp.
Last upload on 17 May 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 18 May 2024
bMerSer1.hap1.asm.20240518.fasta.gz (388.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 22 6.84 Mbp 2 113.50 Mbp
20 57 4.87 Mbp 4 87.03 Mbp
30 104 3.57 Mbp 7 65.55 Mbp
40 171 2.33 Mbp 11 32.86 Mbp
50 283 1.29 Mbp 19 16.20 Mbp
60 565 367.92 Kbp 109 469.98 Kbp
70 1890 62.15 Kbp 1359 63.88 Kbp
80 0 0
90 0 0
100 0 0
0.722x 3152 1.41 Gbp 2598 1.41 Gbp
NG based on genome size 1.96 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 18 May 2024
bMerSer1.hap2.asm.20240518.fasta.gz (368.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 21 6.87 Mbp 2 119.34 Mbp
20 55 5.07 Mbp 4 84.58 Mbp
30 101 3.68 Mbp 7 65.35 Mbp
40 167 2.31 Mbp 10 38.05 Mbp
50 286 1.12 Mbp 18 18.05 Mbp
60 652 246.59 Kbp 177 273.30 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.674x 2163 1.32 Gbp 1634 1.32 Gbp
NG based on genome size 1.96 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 18 May 2024
bMerSer1.MT.20240518.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.