Mesoplodon bidens
Sowerby's beaked whale
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | mMesBid2 | 156.16 Gbp | 48.53x | 56.9 GiB | |
Arima | mMesBid2 | 1051.74 Gbp | 326.87x | 292.1 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 3.22 Gbp.
Last upload on 5 March 2024.
Coverage based on genome size 3.22 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mMesBid2 | PacBio HiFi (.bam) | 156.16 Gbp | 48.53x | 56.9 GiB | |
Arima | 1051.74 Gbp | 326.87x | 292.1 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 3.22 Gbp.
Last upload on 5 March 2024.
Coverage based on genome size 3.22 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 6 March 2024
mMesBid2.hap1.asm.20240306.fasta.gz (705.4 MiB)
Quality: not computed
Version assembly_cambridge from 6 March 2024
mMesBid2.hap1.asm.20240306.fasta.gz (705.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 34 | 7.71 Mbp | 2 | 187.10 Mbp |
20 | 82 | 5.93 Mbp | 4 | 175.36 Mbp |
30 | 143 | 4.54 Mbp | 6 | 112.06 Mbp |
40 | 224 | 3.57 Mbp | 9 | 104.13 Mbp |
50 | 326 | 2.74 Mbp | 12 | 90.18 Mbp |
60 | 462 | 2.03 Mbp | 16 | 77.84 Mbp |
70 | 652 | 1.39 Mbp | 23 | 14.95 Mbp |
80 | 962 | 0.75 Mbp | 129 | 1.47 Mbp |
90 | 1926 | 106.00 Kbp | 921 | 111.00 Kbp |
100 | 0 | 0 | ||
0.914x | 2825 | 2.94 Gbp | 1804 | 2.94 Gbp |
NG based on genome size 3.22 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 6 March 2024
mMesBid2.hap2.asm.20240306.fasta.gz (685.9 MiB)
Quality: not computed
Version assembly_cambridge from 6 March 2024
mMesBid2.hap2.asm.20240306.fasta.gz (685.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 34 | 7.49 Mbp | 2 | 185.71 Mbp |
20 | 82 | 6.04 Mbp | 4 | 154.40 Mbp |
30 | 142 | 4.72 Mbp | 6 | 111.84 Mbp |
40 | 221 | 3.60 Mbp | 9 | 98.41 Mbp |
50 | 323 | 2.73 Mbp | 13 | 87.59 Mbp |
60 | 459 | 2.05 Mbp | 17 | 62.93 Mbp |
70 | 654 | 1.30 Mbp | 25 | 18.62 Mbp |
80 | 1012 | 0.60 Mbp | 161 | 0.95 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.875x | 2179 | 2.82 Gbp | 1195 | 2.82 Gbp |
NG based on genome size 3.22 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 6 March 2024
mMesBid2.MT.20240306.fasta.gz (5.1 KiB)
Quality: not computed
Version assembly_MT_cambridge from 6 March 2024
mMesBid2.MT.20240306.fasta.gz (5.1 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.