Morphnus guianensis

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) bMorGui1 90.17 Gbp N/A 44.1 GiB
PacBio HiFi (.bam) bMorGui1 760.64 Gbp N/A 372.4 GiB
Arima bMorGui1 103.24 Gbp N/A 55.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 19 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bMorGui1 PacBio HiFi (.fq) 90.17 Gbp N/A 44.1 GiB
PacBio HiFi (.bam) 760.64 Gbp N/A 372.4 GiB
Arima 103.24 Gbp N/A 55.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 19 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 12 February 2024
bMorGui1.HiC.hap1.20240212.fasta.gz (384.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 65.34 Mbp 2 86.42 Mbp
20 5 47.51 Mbp 4 81.00 Mbp
30 9 37.89 Mbp 6 68.34 Mbp
40 13 33.07 Mbp 8 60.94 Mbp
50 17 28.51 Mbp 10 49.18 Mbp
60 22 26.55 Mbp 14 44.20 Mbp
70 28 21.84 Mbp 17 34.40 Mbp
80 35 18.15 Mbp 22 30.33 Mbp
90 49 4.32 Mbp 27 21.17 Mbp
100 660 8.87 Kbp 579 8.87 Kbp
1.000x 660 1.41 Gbp 579 1.41 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 12 February 2024
bMorGui1.HiC.hap2.20240212.fasta.gz (389.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 52.76 Mbp 2 88.38 Mbp
20 6 44.24 Mbp 4 82.11 Mbp
30 9 37.37 Mbp 6 70.68 Mbp
40 14 31.17 Mbp 8 60.68 Mbp
50 19 26.37 Mbp 11 49.37 Mbp
60 25 22.95 Mbp 14 45.43 Mbp
70 32 17.96 Mbp 17 34.52 Mbp
80 43 9.43 Mbp 23 24.28 Mbp
90 77 2.20 Mbp 43 2.47 Mbp
100 691 15.12 Kbp 607 15.12 Kbp
1.000x 691 1.48 Gbp 607 1.48 Gbp
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 12 February 2024
bMorGui1.MT.20240212.fasta.gz (5.7 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/bMorGui1.yml (view)
species: Morphnus guianensis 
specimen: bMorGui1 
projects:  
  - vgp 
  - gbb 
assembled_by_group: Rockefeller 
data_location: S3 
release_to: S3 
primary: s3://genomeark/species/Morphnus_guianensis/bMorGui1/assembly_vgp_HiC_2.0/bMorGui1.HiC.hap1.20240212.fasta.gz 
haplotigs: s3://genomeark/species/Morphnus_guianensis/bMorGui1/assembly_vgp_HiC_2.0/bMorGui1.HiC.hap2.20240212.fasta.gz 
pretext: s3://genomeark/species/Morphnus_guianensis/bMorGui1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/bMorGui1_hap1_s2.pretext 
pretext: s3://genomeark/species/Morphnus_guianensis/bMorGui1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/bMorGui1_hap2_s2.pretext 
kmer_spectra_img: s3://genomeark/species/Morphnus_guianensis/bMorGui1/assembly_vgp_HiC_2.0/evaluation/merqury/bMorGui1_png/ 
pacbio_read_dir: s3://genomeark/species/Morphnus_guianensis/bMorGui1/genomic_data/pacbio_hifi/ 
pacbio_read_type: hifi 
hic_read_dir: s3://genomeark/species/Morphnus_guianensis/bMorGui1/genomic_data/arima/ 
pipeline:  
  - hifiasm (0.19.3+galaxy0) 
  - yahs (1.2a.2+galaxy1) 
notes: This was a Hifiasm-HiC assembly of bMorGui1. The hap1 assembly and hap2 assembly underwent separate HiC scaffolding with YaHS. The HiC prep kit used was Arima, so 5 bp were trimmed off the start of the Hi-C reads before scaffolding. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.