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Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | fMyoSco1 | 43.68 Gbp | N/A | 34.7 GiB | |
Arima | fMyoSco1 | 160.18 Gbp | N/A | 86.2 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 29 June 2023.
Coverage based on genome size .
Last upload on 29 June 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fMyoSco1 | PacBio HiFi (.fq) | 43.68 Gbp | N/A | 34.7 GiB | |
Arima | 160.18 Gbp | N/A | 86.2 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 29 June 2023.
Coverage based on genome size .
Last upload on 29 June 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 18 July 2023
fMyoSco1.HiC.hap1.20230718.fasta.gz (198.9 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 18 July 2023
fMyoSco1.HiC.hap1.20230718.fasta.gz (198.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 7 | 9.15 Mbp | 2 | 56.58 Mbp |
20 | 16 | 6.57 Mbp | 3 | 53.07 Mbp |
30 | 28 | 5.66 Mbp | 4 | 52.05 Mbp |
40 | 43 | 4.14 Mbp | 6 | 38.12 Mbp |
50 | 63 | 3.08 Mbp | 8 | 36.38 Mbp |
60 | 89 | 2.49 Mbp | 10 | 35.28 Mbp |
70 | 123 | 1.80 Mbp | 12 | 32.09 Mbp |
80 | 173 | 1.12 Mbp | 14 | 30.75 Mbp |
90 | 259 | 0.61 Mbp | 17 | 26.51 Mbp |
100 | 585 | 17.14 Kbp | 98 | 17.14 Kbp |
1.000x | 585 | 0.72 Gbp | 98 | 0.72 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 18 July 2023
fMyoSco1.HiC.hap2.20230718.fasta.gz (199.8 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 18 July 2023
fMyoSco1.HiC.hap2.20230718.fasta.gz (199.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 8 | 7.44 Mbp | 2 | 55.75 Mbp |
20 | 20 | 5.62 Mbp | 3 | 53.98 Mbp |
30 | 34 | 4.57 Mbp | 4 | 53.07 Mbp |
40 | 51 | 4.05 Mbp | 6 | 37.57 Mbp |
50 | 71 | 3.03 Mbp | 8 | 36.61 Mbp |
60 | 99 | 2.26 Mbp | 10 | 33.25 Mbp |
70 | 136 | 1.71 Mbp | 12 | 32.48 Mbp |
80 | 188 | 1.13 Mbp | 14 | 30.64 Mbp |
90 | 275 | 0.60 Mbp | 17 | 22.51 Mbp |
100 | 591 | 10.35 Kbp | 107 | 10.35 Kbp |
1.000x | 591 | 0.72 Gbp | 107 | 0.72 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 18 July 2023
fMyoSco1.MT.20230718.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 18 July 2023
fMyoSco1.MT.20230718.fasta.gz (5.4 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.