Nomascus leucogenys

Northern White-Cheeked Gibbon

Included in the T2T.


metadata.yaml (view) (edit on github)
CC BY-SA 2.0 Eric Kilby (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mNomLeu1 200.29 Gbp 62.01x 72.7 GiB
mNomLeu2 200.29 Gbp 62.01x 75.6 GiB
PacBio HiFi (.bam) mNomLeu1 210.99 Gbp 65.32x 695.3 GiB
mNomLeu2 165.65 Gbp 51.29x 389.2 GiB
Oxford Nanopore Simplex mNomLeu1 253.72 Gbp 78.55x 197.0 GiB
mNomLeu2 341.54 Gbp 105.74x 171.7 GiB
Arima mNomLeu2 259.53 Gbp 80.35x 127.7 GiB
Illumina mNomLeu1 67.15 Gbp 20.79x 28.5 GiB
mNomLeu2 36.53 Gbp 11.31x 14.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.23 Gbp.
Last upload on 25 March 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mNomLeu1 PacBio HiFi (.fq) 200.29 Gbp 62.01x 72.7 GiB
PacBio HiFi (.bam) 210.99 Gbp 65.32x 695.3 GiB
Oxford Nanopore Simplex 253.72 Gbp 78.55x 197.0 GiB
Illumina 67.15 Gbp 20.79x 28.5 GiB
mNomLeu2 PacBio HiFi (.fq) 200.29 Gbp 62.01x 75.6 GiB
PacBio HiFi (.bam) 165.65 Gbp 51.29x 389.2 GiB
Oxford Nanopore Simplex 341.54 Gbp 105.74x 171.7 GiB
Arima 259.53 Gbp 80.35x 127.7 GiB
Illumina 36.53 Gbp 11.31x 14.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.23 Gbp.
Last upload on 25 March 2025.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mNomLeu1.HiC.hap1.20250404.fasta.gz (668.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 169.26 Mbp 2 169.26 Mbp
20 4 162.17 Mbp 4 162.17 Mbp
30 7 123.66 Mbp 7 132.01 Mbp
40 9 118.55 Mbp 9 122.62 Mbp
50 12 112.72 Mbp 12 115.01 Mbp
60 15 102.45 Mbp 15 111.88 Mbp
70 19 88.70 Mbp 18 102.45 Mbp
80 23 53.54 Mbp 21 88.70 Mbp
90 0 0
100 0 0
0.884x 46 2.86 Gbp 41 2.86 Gbp
NG based on genome size 3.23 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mNomLeu1.HiC.hap2.20250404.fasta.gz (704.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 169.20 Mbp 2 169.20 Mbp
20 4 159.98 Mbp 4 159.98 Mbp
30 6 148.96 Mbp 6 148.96 Mbp
40 9 127.01 Mbp 9 127.01 Mbp
50 12 113.48 Mbp 12 113.48 Mbp
60 14 112.25 Mbp 14 112.25 Mbp
70 17 106.48 Mbp 17 106.48 Mbp
80 21 89.53 Mbp 21 96.10 Mbp
90 26 40.38 Mbp 25 40.38 Mbp
100 0 0
0.927x 129 2.99 Gbp 125 2.99 Gbp
NG based on genome size 3.23 Gbp.

Individual 2 Haplotype 1 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mNomLeu2.HiC.hap1.20250404.fasta.gz (703.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 167.29 Mbp 2 167.29 Mbp
20 4 160.55 Mbp 4 160.55 Mbp
30 6 154.43 Mbp 6 154.43 Mbp
40 9 124.42 Mbp 9 124.42 Mbp
50 11 123.97 Mbp 11 123.97 Mbp
60 14 114.16 Mbp 14 114.16 Mbp
70 17 105.13 Mbp 17 107.87 Mbp
80 20 99.90 Mbp 20 99.90 Mbp
90 25 40.43 Mbp 24 42.12 Mbp
100 0 0
0.927x 48 2.99 Gbp 45 2.99 Gbp
NG based on genome size 3.23 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mNomLeu2.HiC.hap2.20250404.fasta.gz (662.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 167.84 Mbp 2 167.84 Mbp
20 4 156.53 Mbp 4 156.53 Mbp
30 7 127.44 Mbp 7 127.44 Mbp
40 9 123.31 Mbp 9 123.31 Mbp
50 12 112.58 Mbp 12 112.64 Mbp
60 15 106.11 Mbp 15 110.14 Mbp
70 18 97.35 Mbp 18 102.57 Mbp
80 22 59.70 Mbp 21 90.08 Mbp
90 0 0
100 0 0
0.875x 50 2.83 Gbp 47 2.83 Gbp
NG based on genome size 3.23 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.