Pelophylax lessonae

pool frog

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: aPelLes
  name: Pelophylax lessonae
  taxon_id: 45623
  common_name: pool frog
  order:
    name: Anura
  family:
    name: Ranidae
  individuals:
    - short_name: aPelLes1
      biosample_id: SAMEA112468029
      sex: female
  genome_size: 6288540000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) aPelLes1 220.57 Gbp 35.08x 84.2 GiB
Arima aPelLes1 873.66 Gbp 138.93x 268.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 6.29 Gbp.
Last upload on 23 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
aPelLes1 PacBio HiFi (.bam) 220.57 Gbp 35.08x 84.2 GiB
Arima 873.66 Gbp 138.93x 268.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 6.29 Gbp.
Last upload on 23 December 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 19 September 2024
aPelLes1.hap1.asm.20240919.fasta.gz (1.6 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 52 9.39 Mbp 1 0.88 Gbp
20 130 7.01 Mbp 2 0.74 Gbp
30 231 5.55 Mbp 3 0.67 Gbp
40 358 4.38 Mbp 4 0.65 Gbp
50 521 3.45 Mbp 5 0.56 Gbp
60 734 2.57 Mbp 6 330.00 Mbp
70 1023 1.84 Mbp 8 296.03 Mbp
80 1463 1.10 Mbp 11 221.09 Mbp
90 2490 277.24 Kbp 78 0.73 Mbp
100 0 0
0.926x 4442 5.82 Gbp 1575 5.82 Gbp
NG based on genome size 6.29 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 19 September 2024
aPelLes1.hap2.asm.20240919.fasta.gz (1.6 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 53 9.32 Mbp 1 0.89 Gbp
20 131 7.12 Mbp 2 0.74 Gbp
30 231 5.62 Mbp 3 0.67 Gbp
40 357 4.39 Mbp 4 0.65 Gbp
50 519 3.48 Mbp 5 0.55 Gbp
60 727 2.64 Mbp 6 323.13 Mbp
70 1007 1.89 Mbp 8 281.06 Mbp
80 1432 1.09 Mbp 11 225.29 Mbp
90 2549 211.09 Kbp 123 0.52 Mbp
100 0 0
0.915x 3670 5.75 Gbp 979 5.75 Gbp
NG based on genome size 6.29 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 19 September 2024
aPelLes1.MT.20240919.fasta.gz (5.5 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.