Podarcis bocagei

Bocage's wall lizard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rPodBoc
  name: Podarcis bocagei
  taxon_id: 90520
  common_name: Bocage's wall lizard
  order:
    name: Squamata
  family:
    name: Lacertidae
  individuals:
    - short_name: rPodBoc1
      biosample_id: SAMEA115336769
      sex: female
  genome_size: 1932772500
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rPodBoc1 45.42 Gbp 23.50x 14.4 GiB
Arima rPodBoc1 221.40 Gbp 114.55x 62.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 23 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rPodBoc1 PacBio HiFi (.bam) 45.42 Gbp 23.50x 14.4 GiB
Arima 221.40 Gbp 114.55x 62.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 23 May 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 1 June 2024
rPodBoc1.hap1.asm.20240601.fasta.gz (420.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 23 6.04 Mbp 2 132.82 Mbp
20 59 4.68 Mbp 3 126.94 Mbp
30 105 3.68 Mbp 5 104.57 Mbp
40 164 2.92 Mbp 7 94.95 Mbp
50 242 2.15 Mbp 9 81.34 Mbp
60 345 1.60 Mbp 12 62.63 Mbp
70 493 1.06 Mbp 15 53.64 Mbp
80 783 340.00 Kbp 31 1.38 Mbp
90 0 0
100 0 0
0.837x 1474 1.62 Gbp 602 1.62 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 1 June 2024
rPodBoc1.hap2.asm.20240601.fasta.gz (400.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 22 6.23 Mbp 2 133.17 Mbp
20 58 4.68 Mbp 3 127.84 Mbp
30 104 3.70 Mbp 5 105.62 Mbp
40 165 2.76 Mbp 7 94.91 Mbp
50 246 2.03 Mbp 9 80.54 Mbp
60 358 1.48 Mbp 12 62.56 Mbp
70 527 0.82 Mbp 15 47.52 Mbp
80 0 0
90 0 0
100 0 0
0.796x 1540 1.54 Gbp 710 1.54 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 1 June 2024
rPodBoc1.MT.20240601.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.