Podarcis filfolensis

Filfola wall lizard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rPodFil
  name: Podarcis filfolensis
  taxon_id: 65481
  common_name: Filfola wall lizard
  order:
    name: Squamata
  family:
    name: Lacertidae
  individuals:
    - short_name: rPodFil1
      biosample_id: SAMEA113403362
      sex: female
  genome_size: 1932772500
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rPodFil1 48.29 Gbp 24.98x 18.2 GiB
Arima rPodFil1 205.75 Gbp 106.45x 57.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 23 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rPodFil1 PacBio HiFi (.bam) 48.29 Gbp 24.98x 18.2 GiB
Arima 205.75 Gbp 106.45x 57.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 23 February 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 29 February 2024
rPodFil1.hap1.asm.20240229.fasta.gz (427.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 19 7.62 Mbp 2 125.39 Mbp
20 48 5.62 Mbp 4 104.86 Mbp
30 91 3.81 Mbp 5 98.83 Mbp
40 149 2.95 Mbp 8 87.85 Mbp
50 228 2.05 Mbp 10 75.11 Mbp
60 345 1.34 Mbp 13 54.33 Mbp
70 539 0.71 Mbp 17 41.06 Mbp
80 0 0
90 0 0
100 0 0
0.769x 1329 1.49 Gbp 509 1.49 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 29 February 2024
rPodFil1.hap2.asm.20240229.fasta.gz (414.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 20 7.60 Mbp 2 124.51 Mbp
20 50 5.07 Mbp 4 105.53 Mbp
30 93 3.87 Mbp 5 100.45 Mbp
40 150 2.89 Mbp 7 91.29 Mbp
50 229 2.04 Mbp 10 72.22 Mbp
60 347 1.28 Mbp 13 53.71 Mbp
70 563 0.54 Mbp 17 40.50 Mbp
80 0 0
90 0 0
100 0 0
0.743x 949 1.44 Gbp 171 1.44 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 29 February 2024
rPodFil1.MT.20240229.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.