Podarcis vaucheri

Andalusian wall lizard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rPodVau
  name: Podarcis vaucheri
  taxon_id: 140051
  common_name: Andalusian wall lizard
  order:
    name: Squamata
  family:
    name: Lacertidae
  individuals:
    - short_name: rPodVau1
      biosample_id: SAMEA115336770
      sex: female
  genome_size: 1932772500
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rPodVau1 49.72 Gbp 25.72x 16.1 GiB
Arima rPodVau1 230.47 Gbp 119.25x 62.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 11 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rPodVau1 PacBio HiFi (.bam) 49.72 Gbp 25.72x 16.1 GiB
Arima 230.47 Gbp 119.25x 62.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 11 May 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 4 July 2024
rPodVau1.hap1.asm.20240704.fasta.gz (457.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 22 6.70 Mbp 2 134.30 Mbp
20 55 5.00 Mbp 3 129.08 Mbp
30 98 4.07 Mbp 5 107.42 Mbp
40 153 3.09 Mbp 7 97.76 Mbp
50 224 2.36 Mbp 9 81.28 Mbp
60 319 1.74 Mbp 12 63.01 Mbp
70 455 1.16 Mbp 15 52.52 Mbp
80 704 441.19 Kbp 20 13.25 Mbp
90 0 0
100 0 0
0.839x 1249 1.62 Gbp 387 1.62 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 4 July 2024
rPodVau1.hap2.asm.20240704.fasta.gz (428.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 23 6.83 Mbp 2 134.07 Mbp
20 55 5.10 Mbp 3 128.28 Mbp
30 99 3.87 Mbp 5 105.68 Mbp
40 156 2.96 Mbp 7 95.73 Mbp
50 235 2.15 Mbp 9 78.58 Mbp
60 342 1.50 Mbp 12 63.80 Mbp
70 507 0.89 Mbp 16 45.04 Mbp
80 0 0
90 0 0
100 0 0
0.779x 984 1.51 Gbp 189 1.51 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 4 July 2024
rPodVau1.MT.20240704.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.