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Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | fProLin1 | 66.32 Gbp | N/A | 34.7 GiB | |
PacBio HiFi (.bam) | fProLin1 | 66.79 Gbp | N/A | 263.8 GiB | |
Arima | fProLin1 | 362.32 Gbp | N/A | 194.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 16 April 2024.
Coverage based on genome size .
Last upload on 16 April 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fProLin1 | PacBio HiFi (.fq) | 66.32 Gbp | N/A | 34.7 GiB | |
PacBio HiFi (.bam) | 66.79 Gbp | N/A | 263.8 GiB | ||
Arima | 362.32 Gbp | N/A | 194.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 16 April 2024.
Coverage based on genome size .
Last upload on 16 April 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 13 July 2024
fProLin1.HiC.hap1.20240713.fasta.gz (378.2 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 13 July 2024
fProLin1.HiC.hap1.20240713.fasta.gz (378.2 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 6 | 21.71 Mbp | 3 | 57.34 Mbp |
20 | 14 | 15.35 Mbp | 5 | 52.80 Mbp |
30 | 25 | 11.89 Mbp | 8 | 49.58 Mbp |
40 | 39 | 8.82 Mbp | 11 | 48.85 Mbp |
50 | 59 | 6.19 Mbp | 14 | 47.30 Mbp |
60 | 91 | 3.35 Mbp | 17 | 44.14 Mbp |
70 | 148 | 1.97 Mbp | 20 | 43.38 Mbp |
80 | 254 | 0.99 Mbp | 24 | 36.16 Mbp |
90 | 481 | 400.10 Kbp | 30 | 12.16 Mbp |
100 | 1820 | 11.93 Kbp | 854 | 11.93 Kbp |
1.000x | 1820 | 1.43 Gbp | 854 | 1.43 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 13 July 2024
fProLin1.HiC.hap2.20240713.fasta.gz (378.5 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 13 July 2024
fProLin1.HiC.hap2.20240713.fasta.gz (378.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 6 | 20.38 Mbp | 3 | 59.21 Mbp |
20 | 15 | 15.01 Mbp | 5 | 55.10 Mbp |
30 | 26 | 11.77 Mbp | 8 | 51.53 Mbp |
40 | 40 | 8.94 Mbp | 11 | 49.13 Mbp |
50 | 59 | 6.32 Mbp | 14 | 46.20 Mbp |
60 | 91 | 3.34 Mbp | 17 | 43.95 Mbp |
70 | 149 | 1.93 Mbp | 20 | 42.59 Mbp |
80 | 253 | 1.05 Mbp | 24 | 36.19 Mbp |
90 | 466 | 441.82 Kbp | 30 | 9.58 Mbp |
100 | 1536 | 14.39 Kbp | 590 | 14.39 Kbp |
1.000x | 1536 | 1.44 Gbp | 590 | 1.44 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 15 July 2024
fProLin1.MT.20240715.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 15 July 2024
fProLin1.MT.20240715.fasta.gz (5.4 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.