Protomyctophum andriashevi

Andriashev's lanternfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fProAnd
  name: Protomyctophum andriashevi
  taxon_id: 443713
  common_name: Andriashev's lanternfish
  order:
    name: Myctophiformes
  family:
    name: Myctophidae
  individuals:
    - short_name: fProAnd1
      biosample_id: SAMEA12815433
      sex: male
  genome_size: 1907100000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fProAnd1 62.73 Gbp 32.89x 102.0 GiB
Arima fProAnd1 182.78 Gbp 95.84x 52.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 29 January 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fProAnd1 PacBio HiFi (.bam) 62.73 Gbp 32.89x 102.0 GiB
Arima 182.78 Gbp 95.84x 52.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 29 January 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 23 May 2024
fProAnd1.pri.asm.20240523.fasta.gz (273.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 124 1.09 Mbp 3 75.14 Mbp
20 334 0.76 Mbp 6 57.75 Mbp
30 624 0.56 Mbp 9 47.41 Mbp
40 1042 364.85 Kbp 14 34.57 Mbp
50 1834 151.00 Kbp 29 1.90 Mbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.563x 3831 1.07 Gbp 1198 1.08 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 23 May 2024
fProAnd1.alt.asm.20240523.fasta.gz (291.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 272 490.84 Kbp 272 491.68 Kbp
20 768 307.72 Kbp 767 309.41 Kbp
30 1547 198.36 Kbp 1543 198.88 Kbp
40 2828 112.22 Kbp 2819 112.71 Kbp
50 5332 51.20 Kbp 5308 51.35 Kbp
60 10998 24.59 Kbp 10966 24.60 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.686x 20663 1.31 Gbp 20631 1.31 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 23 May 2024
fProAnd1.MT.20240523.fasta.gz (5.7 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.