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Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | fPseAme1 | 29.61 Gbp | N/A | 18.6 GiB | |
Arima | fPseAme1 | 196.60 Gbp | N/A | 100.2 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 20 July 2023.
Coverage based on genome size .
Last upload on 20 July 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fPseAme1 | PacBio HiFi (.fq) | 29.61 Gbp | N/A | 18.6 GiB | |
Arima | 196.60 Gbp | N/A | 100.2 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 20 July 2023.
Coverage based on genome size .
Last upload on 20 July 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 15 August 2023
fPseAme1.HiC.hap1.20230815.fasta.gz (162.2 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 15 August 2023
fPseAme1.HiC.hap1.20230815.fasta.gz (162.2 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 8 | 5.99 Mbp | 2 | 27.59 Mbp |
20 | 20 | 4.36 Mbp | 5 | 26.51 Mbp |
30 | 34 | 3.32 Mbp | 7 | 25.92 Mbp |
40 | 53 | 2.54 Mbp | 9 | 25.59 Mbp |
50 | 78 | 1.97 Mbp | 11 | 23.52 Mbp |
60 | 111 | 1.49 Mbp | 14 | 22.78 Mbp |
70 | 163 | 0.83 Mbp | 16 | 21.59 Mbp |
80 | 260 | 423.72 Kbp | 19 | 19.84 Mbp |
90 | 453 | 204.12 Kbp | 22 | 16.25 Mbp |
100 | 1363 | 2.97 Kbp | 419 | 2.97 Kbp |
1.000x | 1363 | 0.57 Gbp | 419 | 0.57 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 15 August 2023
fPseAme1.HiC.hap2.20230815.fasta.gz (160.8 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 15 August 2023
fPseAme1.HiC.hap2.20230815.fasta.gz (160.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 7 | 6.93 Mbp | 2 | 41.42 Mbp |
20 | 17 | 5.12 Mbp | 4 | 27.66 Mbp |
30 | 30 | 3.69 Mbp | 6 | 26.38 Mbp |
40 | 47 | 2.75 Mbp | 8 | 26.19 Mbp |
50 | 70 | 2.09 Mbp | 10 | 25.87 Mbp |
60 | 102 | 1.50 Mbp | 12 | 25.47 Mbp |
70 | 149 | 0.98 Mbp | 14 | 23.06 Mbp |
80 | 227 | 495.70 Kbp | 17 | 21.56 Mbp |
90 | 417 | 195.01 Kbp | 20 | 16.32 Mbp |
100 | 1274 | 3.19 Kbp | 337 | 3.19 Kbp |
1.000x | 1274 | 0.56 Gbp | 337 | 0.56 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 15 August 2023
fPseAme1.MT.20230815.fasta.gz (5.6 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 15 August 2023
fPseAme1.MT.20230815.fasta.gz (5.6 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.