Raja montagui

spotted ray

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: sRajMon
  name: Raja montagui
  taxon_id: 27588
  common_name: spotted ray
  order:
    name: Rajiformes
  family:
    name: Rajidae
  individuals:
    - short_name: sRajMon1
      biosample_id: SAMEA114298640
      sex:
  genome_size: 3374100000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) sRajMon1 83.99 Gbp 24.89x 32.4 GiB
Arima sRajMon1 305.39 Gbp 90.51x 87.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.37 Gbp.
Last upload on 7 July 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
sRajMon1 PacBio HiFi (.bam) 83.99 Gbp 24.89x 32.4 GiB
Arima 305.39 Gbp 90.51x 87.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.37 Gbp.
Last upload on 7 July 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 8 July 2024
sRajMon1.hap1.asm.20240708.fasta.gz (800.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 67 3.80 Mbp 3 126.74 Mbp
20 176 2.60 Mbp 5 114.92 Mbp
30 334 1.81 Mbp 9 78.09 Mbp
40 556 1.27 Mbp 14 63.14 Mbp
50 875 0.88 Mbp 20 46.73 Mbp
60 1351 0.57 Mbp 29 33.04 Mbp
70 2196 276.52 Kbp 66 1.61 Mbp
80 4639 65.15 Kbp 1897 65.55 Kbp
90 0 0
100 0 0
0.829x 7703 2.80 Gbp 4970 2.80 Gbp
NG based on genome size 3.37 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 8 July 2024
sRajMon1.hap2.asm.20240708.fasta.gz (786.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 74 3.54 Mbp 3 127.34 Mbp
20 190 2.40 Mbp 5 113.15 Mbp
30 357 1.73 Mbp 9 77.52 Mbp
40 590 1.23 Mbp 14 62.30 Mbp
50 916 0.87 Mbp 21 45.68 Mbp
60 1407 0.54 Mbp 29 32.75 Mbp
70 2272 268.13 Kbp 77 1.09 Mbp
80 5139 44.21 Kbp 2376 44.46 Kbp
90 0 0
100 0 0
0.812x 6734 2.74 Gbp 3983 2.74 Gbp
NG based on genome size 3.37 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 8 July 2024
sRajMon1.MT.20240708.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.