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Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | mRhiCys1 | 29.89 Gbp | N/A | 106.6 GiB | |
PacBio HiFi (.bam) | mRhiCys1 | 125.02 Gbp | N/A | 445.8 GiB | |
Arima | mRhiCys1 | 171.90 Gbp | N/A | 72.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 23 November 2023.
Coverage based on genome size .
Last upload on 23 November 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mRhiCys1 | PacBio HiFi (.fq) | 29.89 Gbp | N/A | 106.6 GiB | |
PacBio HiFi (.bam) | 125.02 Gbp | N/A | 445.8 GiB | ||
Arima | 171.90 Gbp | N/A | 72.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 23 November 2023.
Coverage based on genome size .
Last upload on 23 November 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 4 December 2023
mRhiCys1.HiC.hap1.20231204.fasta.gz (803.4 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 4 December 2023
mRhiCys1.HiC.hap1.20231204.fasta.gz (803.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 4 | 75.81 Mbp | 2 | 175.78 Mbp |
20 | 8 | 60.08 Mbp | 4 | 173.05 Mbp |
30 | 14 | 50.50 Mbp | 6 | 154.77 Mbp |
40 | 22 | 37.08 Mbp | 8 | 130.66 Mbp |
50 | 31 | 31.80 Mbp | 10 | 125.81 Mbp |
60 | 42 | 26.65 Mbp | 13 | 113.78 Mbp |
70 | 55 | 17.99 Mbp | 16 | 86.40 Mbp |
80 | 80 | 9.39 Mbp | 21 | 46.40 Mbp |
90 | 137 | 3.64 Mbp | 59 | 3.98 Mbp |
100 | 640 | 14.34 Kbp | 552 | 14.34 Kbp |
1.000x | 640 | 3.18 Gbp | 552 | 3.18 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 4 December 2023
mRhiCys1.HiC.hap2.20231204.fasta.gz (741.2 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 4 December 2023
mRhiCys1.HiC.hap2.20231204.fasta.gz (741.2 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 95.23 Mbp | 2 | 233.91 Mbp |
20 | 7 | 70.62 Mbp | 3 | 180.11 Mbp |
30 | 11 | 59.46 Mbp | 5 | 174.25 Mbp |
40 | 17 | 43.62 Mbp | 6 | 170.56 Mbp |
50 | 25 | 32.76 Mbp | 8 | 145.44 Mbp |
60 | 35 | 24.09 Mbp | 10 | 123.23 Mbp |
70 | 49 | 15.71 Mbp | 14 | 72.75 Mbp |
80 | 74 | 8.52 Mbp | 19 | 43.62 Mbp |
90 | 129 | 3.28 Mbp | 52 | 3.83 Mbp |
100 | 577 | 13.17 Kbp | 488 | 13.17 Kbp |
1.000x | 577 | 2.87 Gbp | 488 | 2.87 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 December 2023
mRhiCys1.MT.20231204.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 4 December 2023
mRhiCys1.MT.20231204.fasta.gz (5.3 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.