Spheniscus demersus

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) bSphDem1 100.27 Gbp N/A 48.1 GiB
PacBio HiFi (.bam) bSphDem1 102.42 Gbp N/A 338.0 GiB
Arima bSphDem1 175.16 Gbp N/A 94.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 27 February 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bSphDem1 PacBio HiFi (.fq) 100.27 Gbp N/A 48.1 GiB
PacBio HiFi (.bam) 102.42 Gbp N/A 338.0 GiB
Arima 175.16 Gbp N/A 94.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 27 February 2025.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 10 March 2025
bSphDem1.HiC.hap1.20250310.fasta.gz (344.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 43.20 Mbp 1 227.36 Mbp
20 6 33.83 Mbp 2 172.71 Mbp
30 11 25.68 Mbp 2 172.71 Mbp
40 16 21.46 Mbp 3 131.90 Mbp
50 23 18.15 Mbp 5 87.97 Mbp
60 31 15.35 Mbp 6 80.99 Mbp
70 41 11.22 Mbp 8 74.14 Mbp
80 56 6.87 Mbp 13 22.91 Mbp
90 88 2.38 Mbp 21 8.89 Mbp
100 1157 12.37 Kbp 989 12.37 Kbp
1.000x 1157 1.31 Gbp 989 1.31 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 10 March 2025
bSphDem1.HiC.hap2.20250310.fasta.gz (342.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 45.36 Mbp 1 227.48 Mbp
20 6 39.40 Mbp 2 172.77 Mbp
30 10 27.56 Mbp 2 172.77 Mbp
40 15 25.21 Mbp 3 132.20 Mbp
50 20 20.62 Mbp 5 87.82 Mbp
60 27 16.28 Mbp 6 80.94 Mbp
70 37 12.37 Mbp 8 74.11 Mbp
80 49 7.91 Mbp 12 24.45 Mbp
90 72 3.55 Mbp 18 13.66 Mbp
100 463 11.34 Kbp 298 11.34 Kbp
1.000x 463 1.27 Gbp 298 1.27 Gbp
NG based on genome size .
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.