Stomias gracilis

na

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fStoGra
  name: Stomias gracilis
  taxon_id: 1091428
  common_name: na
  order:
    name: Stomiiformes
  family:
    name: Stomiidae
  individuals:
    - short_name: fStoGra1
      biosample_id: SAMEA12815439
      sex:
  genome_size: 1271400000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fStoGra1 42.98 Gbp 33.80x 83.9 GiB
Arima fStoGra1 91.48 Gbp 71.95x 29.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.27 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fStoGra1 PacBio HiFi (.bam) 42.98 Gbp 33.80x 83.9 GiB
Arima 91.48 Gbp 71.95x 29.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.27 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 20 November 2023
fStoGra1.pri.asm.20231120.fasta.gz (244.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 37 2.41 Mbp 2 64.63 Mbp
20 112 1.29 Mbp 5 36.87 Mbp
30 240 0.77 Mbp 9 24.46 Mbp
40 454 465.01 Kbp 15 21.14 Mbp
50 809 273.17 Kbp 22 17.73 Mbp
60 1448 141.52 Kbp 30 6.83 Mbp
70 3025 45.87 Kbp 129 336.70 Kbp
80 0 0
90 0 0
100 0 0
0.747x 5596 0.95 Gbp 1867 0.95 Gbp
NG based on genome size 1.27 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 20 November 2023
fStoGra1.alt.asm.20231120.fasta.gz (182.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 112 0.74 Mbp 112 0.74 Mbp
20 375 363.48 Kbp 375 363.48 Kbp
30 860 197.06 Kbp 860 197.06 Kbp
40 1729 110.97 Kbp 1729 110.97 Kbp
50 3382 54.49 Kbp 3382 54.49 Kbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.598x 7478 0.76 Gbp 7478 0.76 Gbp
NG based on genome size 1.27 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 20 November 2023
fStoGra1.MT.20231120.fasta.gz (5.6 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.