Saimiri boliviensis

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mSaiBol1 95.64 Gbp N/A 48.0 GiB
PacBio HiFi (.bam) mSaiBol1 1290.98 Gbp N/A 639.9 GiB
Arima mSaiBol1 5.98 Gbp N/A 3.3 GiB
mSaiBol2 146.21 Gbp N/A 77.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 14 June 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mSaiBol1 PacBio HiFi (.fq) 95.64 Gbp N/A 48.0 GiB
PacBio HiFi (.bam) 1290.98 Gbp N/A 639.9 GiB
Arima 5.98 Gbp N/A 3.3 GiB
mSaiBol2 Arima 146.21 Gbp N/A 77.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 14 June 2024.
Assemblies
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 September 2024
mSaiBol1.MT.20240902.fasta.gz (5.3 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_standard_2.0/mSaiBol1.yml (view)
species: Saimiri boliviensis
specimen: mSaiBol1
projects: 
  - vgp
data_location: S3
release_to: S3
primary: s3://genomeark/species/Saimiri_boliviensis/mSaiBol1/assembly_vgp_standard_2.0/mSaiBol1.standard.pri.20240902.fasta.gz
haplotigs: s3://genomeark/species/Saimiri_boliviensis/mSaiBol1/assembly_vgp_standard_2.0/mSaiBol1.standard.alt.20240902.fasta.gz
pretext: s3://genomeark/species/Saimiri_boliviensis/mSaiBol1/assembly_vgp_standard_2.0/evaluation/pri/pretext/mSaiBol1_pri__s2.heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Saimiri_boliviensis/mSaiBol1/assembly_vgp_standard_2.0/evaluation/merqury/mSaiBol1_png/
mito: s3://genomeark/species/Saimiri_boliviensis/mSaiBol1/assembly_MT_rockefeller/mSaiBol1.MT.20240902.fasta.gz
pacbio_read_dir: s3://genomeark/species/Saimiri_boliviensis/mSaiBol1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Saimiri_boliviensis/mSaiBol2/genomic_data/arima/
pipeline:
  - hifiasm (0.18.8+galaxy1)
  - yahs (1.2a.2+galaxy1)
assembled_by_group: Rockefeller
notes: This was a primary/alternate assembly of mSaiBol1. The HiC prep was Arima kit 2. HiC data came from a different individual (mSaiBol2) than the HiFi data (mSaiBol1). The primary contigs did not look like they needed purging, so purge_dups was not run on this assembly. HiC coverage was lower than usual (~45X).
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.