Serinus canaria

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 26 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 26 March 2024.
Assemblies
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 13 August 2024
bSerCaa1.MT.20240813.fasta.gz (5.4 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_trio_2.0/bSerCaa1.yml (view)
species: Serinus canaria
specimen: bSerCaa1
projects: 
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
combine_for_curation: true
mat: s3://genomeark/species/Serinus_canaria/bSerCaa1/assembly_vgp_trio_2.0/bSerCaa1.trio.mat.20240812.fasta.gz
pat: s3://genomeark/species/Serinus_canaria/bSerCaa1/assembly_vgp_trio_2.0/bSerCaa1.trio.pat.20240812.fasta.gz
pretext_mat: s3://genomeark/species/Serinus_canaria/bSerCaa1/assembly_vgp_trio_2.0/evaluation/mat/pretext/bSerCaa1_mat_s2.pretext
pretext_pat: s3://genomeark/species/Serinus_canaria/bSerCaa1/assembly_vgp_trio_2.0/evaluation/pat/pretext/bSerCaa1_pat_s2.pretext
kmer_spectra_img: s3://genomeark/species/Serinus_canaria/bSerCaa1/assembly_vgp_trio_2.0/evaluation/merqury/bSerCaa1_png/
mito: s3://genomeark/species/Serinus_canaria/bSerCaa1/assembly_MT_rockefeller/bSerCaa1.MT.20240812.fasta.gz
pacbio_read_dir: s3://genomeark/species/Serinus_canaria/bSerCaa1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
bionano_cmap_dir: s3://genomeark/species/Serinus_canaria/bSerCaa1/genomic_data/bionano/
hic_read_dir: s3://genomeark/species/Serinus_canaria/bSerCaa1/genomic_data/arima/
pipeline: 
  - hifiasm (0.19.8+galaxy1)
  - solve (3.7.0+galaxy3)
  - yahs (1.2a.2+galaxy1)
notes: This was a trio assembly of bSerCaa1, resulting in two phased haplotypes. The mother is bSerCaa2 (hap1/mat), and the father is bSerCaa3 (hap2/pat). The assemblies underwent both Bionano and HiC (Arima) scaffolding. The assembly was performed on vgp.usegalaxy.org. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.