Hylobates pileatus

Pileated Gibbon

Included in the T2T.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mHylPil
  name: Hylobates pileatus
  taxon_id: 9589
  common_name: Pileated Gibbon
  order:
    name: Primates
  family:
    name: Hylobatidae
  individuals:
  -
    short_name: mHylPil1
    name: Domino
    biosample_id: null
    alt_ids:
    - HP120
    sex: male
    birth_date: null
    birth_location: null
    birth_type: null
    mother: null
    father: null
    description: >
      Domino is a male Pileated Gibbon and his genome is being
      sequenced as part of a T2T effort.
    provider: Lucia Carbone, Oregon Health & Science University
    samples:
    -
      sample_id: null
      sample_type: null
      tissue: null
      isolation_source: null
      age: null
      sample_biosample_id: null
      collection_date: null
      provider: Lucia Carbone, Oregon Health & Science University
    project: [ t2t ]
  -
    short_name: mHylPil2
    name: Iszie
    biosample_id: null
    alt_ids:
    - HP185
    sex: female
    birth_date: null
    birth_location: null
    birth_type: null
    mother: null
    father: null
    description: >
      Iszie is a female Pileated Gibbon and her genome is being
      sequenced as part of a T2T effort.
    provider: Lucia Carbone, Oregon Health & Science University
    samples:
    -
      sample_id: null
      sample_type: null
      tissue: null
      isolation_source: null
      age: null
      sample_biosample_id: null
      collection_date: null
      provider: Lucia Carbone, Oregon Health & Science University
    project: [ t2t ]
  genome_size: 3170000000
  genome_size_method: Genomes on a Tree (GoaT) estimate
  project: [ t2t ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mHylPil1 37.11 Gbp 11.71x 31.1 GiB
mHylPil2 142.39 Gbp 44.92x 52.9 GiB
PacBio HiFi (.bam) mHylPil1 37.00 Gbp 11.67x 132.1 GiB
mHylPil2 156.45 Gbp 49.35x 525.2 GiB
Oxford Nanopore Simplex mHylPil1 336.65 Gbp 106.20x 187.6 GiB
mHylPil2 516.41 Gbp 162.91x 275.1 GiB
Arima mHylPil2 317.89 Gbp 100.28x 153.2 GiB
Dovetail Genomics mHylPil1 79.11 Gbp 24.95x 39.9 GiB
Illumina mHylPil1 191.71 Gbp 60.48x 93.7 GiB
mHylPil2 122.69 Gbp 38.70x 51.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.17 Gbp.
Last upload on 27 March 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mHylPil1 PacBio HiFi (.fq) 37.11 Gbp 11.71x 31.1 GiB
PacBio HiFi (.bam) 37.00 Gbp 11.67x 132.1 GiB
Oxford Nanopore Simplex 336.65 Gbp 106.20x 187.6 GiB
Dovetail Genomics 79.11 Gbp 24.95x 39.9 GiB
Illumina 191.71 Gbp 60.48x 93.7 GiB
mHylPil2 PacBio HiFi (.fq) 142.39 Gbp 44.92x 52.9 GiB
PacBio HiFi (.bam) 156.45 Gbp 49.35x 525.2 GiB
Oxford Nanopore Simplex 516.41 Gbp 162.91x 275.1 GiB
Arima 317.89 Gbp 100.28x 153.2 GiB
Illumina 122.69 Gbp 38.70x 51.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.17 Gbp.
Last upload on 27 March 2025.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mHylPil1.HiC.hap1.20250404.fasta.gz (659.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 191.67 Mbp 2 191.67 Mbp
20 3 185.25 Mbp 3 185.25 Mbp
30 5 163.57 Mbp 5 163.57 Mbp
40 6 160.78 Mbp 6 160.78 Mbp
50 8 118.24 Mbp 8 131.57 Mbp
60 11 111.43 Mbp 10 118.24 Mbp
70 13 91.74 Mbp 13 111.43 Mbp
80 17 66.52 Mbp 15 94.88 Mbp
90 21 53.03 Mbp 18 85.98 Mbp
100 44 229.64 Kbp 34 229.64 Kbp
1.000x 44 2.71 Gbp 34 2.71 Gbp
NG based on genome size 3.17 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mHylPil1.HiC.hap2.20250404.fasta.gz (694.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 191.28 Mbp 2 191.28 Mbp
20 3 184.92 Mbp 3 184.92 Mbp
30 5 163.55 Mbp 5 163.55 Mbp
40 7 144.70 Mbp 7 152.20 Mbp
50 9 114.18 Mbp 9 131.50 Mbp
60 11 109.52 Mbp 11 122.82 Mbp
70 14 91.16 Mbp 13 114.18 Mbp
80 18 75.71 Mbp 16 109.52 Mbp
90 23 52.93 Mbp 19 83.44 Mbp
100 32 234.03 Kbp 23 38.21 Mbp
1.000x 32 2.85 Gbp 23 2.85 Gbp
NG based on genome size 3.17 Gbp.
Individual 2 Haplotype 1 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mHylPil2.HiC.hap1.20250404.fasta.gz (692.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 185.16 Mbp 2 191.32 Mbp
20 4 163.58 Mbp 3 185.16 Mbp
30 5 160.45 Mbp 5 163.58 Mbp
40 7 144.17 Mbp 7 144.17 Mbp
50 9 131.36 Mbp 9 131.36 Mbp
60 12 118.41 Mbp 11 125.36 Mbp
70 14 112.57 Mbp 13 115.54 Mbp
80 17 93.37 Mbp 16 110.80 Mbp
90 20 60.68 Mbp 19 88.50 Mbp
100 27 318.45 Kbp 22 59.49 Mbp
1.000x 27 2.84 Gbp 22 2.84 Gbp
NG based on genome size 3.17 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mHylPil2.HiC.hap2.20250404.fasta.gz (692.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 185.32 Mbp 2 191.70 Mbp
20 4 162.90 Mbp 3 185.32 Mbp
30 5 160.79 Mbp 5 162.90 Mbp
40 7 144.71 Mbp 7 144.71 Mbp
50 9 131.44 Mbp 9 131.44 Mbp
60 12 118.19 Mbp 11 123.82 Mbp
70 14 112.10 Mbp 13 114.17 Mbp
80 17 95.69 Mbp 16 109.57 Mbp
90 20 83.33 Mbp 19 89.05 Mbp
100 25 130.95 Kbp 23 130.95 Kbp
1.000x 25 2.84 Gbp 23 2.84 Gbp
NG based on genome size 3.17 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.