Pongo pygmaeus

Bornean orangutan

Included in the T2T.


metadata.yaml (view) (edit on github)
CC BY-NC-SA 2.0 Joachim S. Müller (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) mPonPyg2 3481.77 Gbp 972.70x 6.4 TiB
PacBio HiFi (.fq) mPonPyg2 384.41 Gbp 107.39x 320.0 GiB
PacBio HiFi (.bam) mPonPyg2 648.93 Gbp 181.29x 707.3 GiB
Oxford Nanopore Simplex mPonPyg2 1307.07 Gbp 365.16x 1.0 TiB
Dovetail Genomics mPonPyg2 170.10 Gbp 47.52x 87.2 GiB
Illumina mPonPyg2 166.03 Gbp 46.38x 83.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.58 Gbp.
Last upload on 29 October 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mPonPyg2 PacBio HiFi (subreads) 3481.77 Gbp 972.70x 6.4 TiB
PacBio HiFi (.fq) 384.41 Gbp 107.39x 320.0 GiB
PacBio HiFi (.bam) 648.93 Gbp 181.29x 707.3 GiB
Oxford Nanopore Simplex 1307.07 Gbp 365.16x 1.0 TiB
Dovetail Genomics 170.10 Gbp 47.52x 87.2 GiB
Illumina 166.03 Gbp 46.38x 83.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.58 Gbp.
Last upload on 29 October 2023.
Assemblies
Individual 2 Diploid Assembly
Version assembly_curated from 22 November 2023
mPonPyg2.dip.cur.20231122.fasta.gz (1.7 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 230.81 Mbp 2 230.81 Mbp
20 4 209.25 Mbp 4 209.25 Mbp
30 5 203.83 Mbp 5 203.83 Mbp
40 7 186.35 Mbp 7 186.35 Mbp
50 9 172.53 Mbp 9 172.53 Mbp
60 11 160.97 Mbp 11 160.97 Mbp
70 14 158.53 Mbp 14 158.53 Mbp
80 16 140.59 Mbp 16 143.26 Mbp
90 19 137.91 Mbp 18 140.58 Mbp
100 21 135.49 Mbp 21 137.70 Mbp
1.735x 76 6.21 Gbp 58 6.23 Gbp
NG based on genome size 3.58 Gbp.
Individual 2 Primary Assembly
Version assembly_curated from 22 November 2023
mPonPyg2.pri.cur.20231122.fasta.gz (0.9 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 209.44 Mbp 2 209.44 Mbp
20 4 186.35 Mbp 4 186.35 Mbp
30 6 160.97 Mbp 6 160.97 Mbp
40 8 158.15 Mbp 8 158.15 Mbp
50 11 137.03 Mbp 11 137.03 Mbp
60 13 131.76 Mbp 13 132.18 Mbp
70 16 104.54 Mbp 16 107.89 Mbp
80 20 87.43 Mbp 20 87.43 Mbp
90 0 0
100 0 0
0.898x 33 3.21 Gbp 25 3.22 Gbp
NG based on genome size 3.58 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 22 November 2023
mPonPyg2.alt.cur.20231122.fasta.gz (845.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 209.25 Mbp 2 209.25 Mbp
20 4 183.84 Mbp 4 183.84 Mbp
30 6 159.28 Mbp 6 159.28 Mbp
40 8 139.77 Mbp 8 141.98 Mbp
50 11 135.21 Mbp 11 137.70 Mbp
60 14 107.22 Mbp 14 121.93 Mbp
70 17 95.11 Mbp 17 98.35 Mbp
80 22 56.90 Mbp 21 62.95 Mbp
90 0 0
100 0 0
0.838x 43 3.00 Gbp 33 3.01 Gbp
NG based on genome size 3.58 Gbp.
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 22 November 2023
mPonPyg2.hap1.cur.20231122.fasta.gz (891.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 209.44 Mbp 2 209.44 Mbp
20 4 186.35 Mbp 4 186.35 Mbp
30 6 160.97 Mbp 6 160.97 Mbp
40 8 158.15 Mbp 8 158.15 Mbp
50 11 137.03 Mbp 11 137.03 Mbp
60 13 131.76 Mbp 13 132.18 Mbp
70 16 104.54 Mbp 16 107.89 Mbp
80 20 87.43 Mbp 20 87.43 Mbp
90 0 0
100 0 0
0.884x 32 3.16 Gbp 24 3.17 Gbp
NG based on genome size 3.58 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 22 November 2023
mPonPyg2.hap2.cur.20231122.fasta.gz (858.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 209.25 Mbp 2 209.25 Mbp
20 4 183.84 Mbp 4 183.84 Mbp
30 6 159.28 Mbp 6 159.28 Mbp
40 8 139.77 Mbp 8 141.98 Mbp
50 11 135.21 Mbp 11 137.70 Mbp
60 14 107.22 Mbp 14 121.93 Mbp
70 17 95.11 Mbp 17 98.35 Mbp
80 22 56.90 Mbp 21 62.95 Mbp
90 0 0
100 0 0
0.851x 44 3.05 Gbp 34 3.06 Gbp
NG based on genome size 3.58 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_curated from 22 November 2023
mPonPyg2.MT.cur.20231122.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.