Rattus norvegicus

Norway rat

Included in the VGP and T2T.


metadata.yaml (view) (edit on github)
CC BY-SA 2.0, Jean-Jacques Boujot (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mRatNor1 266.64 Gbp 91.95x 470.0 GiB
PacBio HiFi (.fq) mRatNor4 95.75 Gbp 33.02x 70.7 GiB
Oxford Nanopore Simplex mRatNor3 13.28 Gbp 4.58x 10.3 GiB
mRatNor4 242.71 Gbp 83.69x 184.1 GiB
10x mRatNor1 187.56 Gbp 64.68x 130.2 GiB
Bionano mRatNor1 N/A 266.75x 1.4 GiB
Arima mRatNor1 253.27 Gbp 87.33x 155.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.90 Gbp.
Last upload on 8 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mRatNor1 PacBio CLR 266.64 Gbp 91.95x 470.0 GiB
10x 187.56 Gbp 64.68x 130.2 GiB
Bionano N/A 266.75x 1.4 GiB
Arima 253.27 Gbp 87.33x 155.0 GiB
mRatNor3 Oxford Nanopore Simplex 13.28 Gbp 4.58x 10.3 GiB
mRatNor4 PacBio HiFi (.fq) 95.75 Gbp 33.02x 70.7 GiB
Oxford Nanopore Simplex 242.71 Gbp 83.69x 184.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.90 Gbp.
Last upload on 8 March 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 11 September 2020
mRatNor1.pri.cur.20200911.fasta.gz (770.4 MiB)

Quality: 38.6 errors/Mb (QV=44.13)

Contigs Scaffolds
NG LG Len LG Len
10 3 66.39 Mbp 1 249.05 Mbp
20 7 60.87 Mbp 2 182.69 Mbp
30 12 47.25 Mbp 3 169.03 Mbp
40 17 39.90 Mbp 5 152.45 Mbp
50 26 29.20 Mbp 7 135.01 Mbp
60 35 23.71 Mbp 9 114.18 Mbp
70 49 16.15 Mbp 11 106.81 Mbp
80 71 9.60 Mbp 14 86.53 Mbp
90 114 3.78 Mbp 17 83.83 Mbp
100 755 136 bp 174 746 bp
1.000x 756 2.63 Gbp 175 2.65 Gbp
NG based on genome size 2.90 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 11 September 2020
mRatNor1.alt.cur.20200911.fasta.gz (83.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 139 154.00 Kbp 139 154.00 Kbp
20 347 127.76 Kbp 347 127.81 Kbp
30 584 116.36 Kbp 583 116.47 Kbp
40 840 107.48 Kbp 840 107.52 Kbp
50 1117 100.34 Kbp 1116 100.35 Kbp
60 1413 93.70 Kbp 1412 93.72 Kbp
70 1731 86.65 Kbp 1731 86.67 Kbp
80 2081 77.16 Kbp 2080 77.20 Kbp
90 2485 64.17 Kbp 2483 64.31 Kbp
100 3161 1.53 Kbp 3155 1.53 Kbp
1.000x 3162 286.93 Mbp 3156 286.93 Mbp
NG based on genome size 2.90 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 December 2019
mRatNor1.MT.20191204.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.