Capra_hircus

Capra hircus

goat

Included in the T2T.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -

metadata.yaml (view) (edit on github)
species: short_name: mCapHir name: Capra hircus common_name: goat taxon_id: 9925 order: name: Artiodactyla family: name: Bovidae individuals: - short_name: mCapHir1 name: null biosample_id: null strain: null alt_ids: - k-state_saanan sex: female birth_date: null birth_location: null birth_type: null description: Dam of mCapHir3. provider: null mother: null father: null - short_name: mCapHir2 name: null biosample_id: null strain: null alt_ids: - kiko_684 sex: male birth_date: null birth_location: null birth_type: null description: Sire of mCapHir3. provider: null mother: null father: null - short_name: mCapHir3 name: null biosample_id: null strain: null alt_ids: - KxS sex: female birth_date: null birth_location: null birth_type: null description: null provider: null mother: mCapHir1 father: mCapHir2 genome_size: 3168720000 genome_size_method: GoaT Fuelgen Densitometry project: [ t2t ]

species:
  short_name: mCapHir
  name: Capra hircus
  common_name: goat
  taxon_id: 9925
  order:
    name: Artiodactyla
  family:
    name: Bovidae
  individuals:
  -
      short_name: mCapHir1
      name: null
      biosample_id: null
      strain: null
      alt_ids:
      - k-state_saanan
      sex: female
      birth_date: null
      birth_location: null
      birth_type: null
      description: Dam of mCapHir3.
      provider: null
      mother: null
      father: null
  -
      short_name: mCapHir2
      name: null
      biosample_id: null
      strain: null
      alt_ids:
      - kiko_684
      sex: male
      birth_date: null
      birth_location: null
      birth_type: null
      description: Sire of mCapHir3.
      provider: null
      mother: null
      father: null
  -
      short_name: mCapHir3
      name: null
      biosample_id: null
      strain: null
      alt_ids:
      - KxS
      sex: female
      birth_date: null
      birth_location: null
      birth_type: null
      description: null
      provider: null
      mother: mCapHir1
      father: mCapHir2
  genome_size: 3168720000
  genome_size_method: GoaT Fuelgen Densitometry
  project: [ t2t ]

CC BY-SA 3.0 Quartl (Wikimedia)

No raw data.

Individual 3 Maternal Assembly
Version assembly_verkko_1.0 from 7 December 2023
mCapHir3.mat.20231207.fa.gz (677.2 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	3	143.47 Mbp	3	143.47 Mbp
20	5	126.35 Mbp	5	126.35 Mbp
30	7	122.16 Mbp	7	122.16 Mbp
40	10	115.09 Mbp	10	115.09 Mbp
50	13	100.94 Mbp	13	100.94 Mbp
60	17	79.77 Mbp	17	84.02 Mbp
70	21	58.23 Mbp	21	67.30 Mbp
80	27	50.99 Mbp	26	52.31 Mbp
90	40	5.43 Mbp	37	7.48 Mbp
100	0		0
0.908x	247	2.88 Gbp	241	2.88 Gbp

NG based on genome size 3.17 Gbp.

Individual 3 Paternal Assembly
Version assembly_verkko_1.0 from 7 December 2023
mCapHir3.pat.20231207.fa.gz (677.7 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	3	144.19 Mbp	3	144.19 Mbp
20	5	128.30 Mbp	5	128.30 Mbp
30	7	121.87 Mbp	7	121.87 Mbp
40	10	113.26 Mbp	10	116.62 Mbp
50	13	101.48 Mbp	13	101.48 Mbp
60	16	89.45 Mbp	16	89.89 Mbp
70	20	73.25 Mbp	20	74.79 Mbp
80	25	56.82 Mbp	25	58.03 Mbp
90	39	6.17 Mbp	33	6.75 Mbp
100	0		0
0.906x	202	2.87 Gbp	195	2.87 Gbp

NG based on genome size 3.17 Gbp.

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.