Abramis brama

common bream

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fAbrBra
  name: Abramis brama
  taxon_id: 38527
  common_name: common bream
  order:
    name: Cypriniformes
  family:
    name: Cyprinidae
  individuals:
    - short_name: fAbrBra2
      biosample_id: SAMEA11296536
      sex:
  genome_size: 1271400000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY 3.0 PierreSelim (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fAbrBra2 49.89 Gbp 39.24x 27.5 GiB
Arima fAbrBra2 139.91 Gbp 110.05x 40.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.27 Gbp.
Last upload on 23 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fAbrBra2 PacBio HiFi (.bam) 49.89 Gbp 39.24x 27.5 GiB
Arima 139.91 Gbp 110.05x 40.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.27 Gbp.
Last upload on 23 December 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 2 May 2024
fAbrBra2.pri.cur.20240502.fasta.gz (312.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 16 6.51 Mbp 2 69.26 Mbp
20 38 5.28 Mbp 4 59.17 Mbp
30 65 4.40 Mbp 7 46.18 Mbp
40 96 3.76 Mbp 10 44.55 Mbp
50 133 3.00 Mbp 12 42.26 Mbp
60 180 2.40 Mbp 16 37.72 Mbp
70 245 1.65 Mbp 19 35.60 Mbp
80 347 0.85 Mbp 23 31.40 Mbp
90 0 0
100 0 0
0.872x 893 1.11 Gbp 208 1.11 Gbp
NG based on genome size 1.27 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 2 May 2024
fAbrBra2.alt.cur.20240502.fasta.gz (307.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 64 1.44 Mbp 64 1.44 Mbp
20 175 0.93 Mbp 175 0.93 Mbp
30 333 0.69 Mbp 333 0.70 Mbp
40 548 0.51 Mbp 547 0.52 Mbp
50 841 366.94 Kbp 840 368.26 Kbp
60 1266 242.95 Kbp 1263 243.05 Kbp
70 1994 121.33 Kbp 1991 121.38 Kbp
80 4300 31.26 Kbp 4297 31.26 Kbp
90 0 0
100 0 0
0.857x 7767 1.09 Gbp 7764 1.09 Gbp
NG based on genome size 1.27 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 29 December 2023
fAbrBra2.MT.20231229.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.