Anas crecca

Common teal

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAnaCre
  name: Anas crecca
  taxon_id: 75839
  common_name: Common teal
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bAnaCre1
      biosample_id: SAMEA112468121
      sex: male
  genome_size: 1378980000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAnaCre1 176.11 Gbp 127.71x 62.5 GiB
Arima bAnaCre1 400.66 Gbp 290.55x 116.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 15 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAnaCre1 PacBio HiFi (.bam) 176.11 Gbp 127.71x 62.5 GiB
Arima 400.66 Gbp 290.55x 116.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 15 April 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 11 April 2024
bAnaCre1.pri.asm.20240411.fasta.gz (335.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 8.56 Mbp 5 25.84 Mbp
20 31 6.68 Mbp 10 21.77 Mbp
30 54 5.46 Mbp 18 14.47 Mbp
40 82 4.36 Mbp 29 11.35 Mbp
50 120 3.06 Mbp 43 8.58 Mbp
60 173 2.08 Mbp 64 5.08 Mbp
70 260 1.23 Mbp 102 2.61 Mbp
80 478 244.00 Kbp 213 430.00 Kbp
90 0 0
100 0 0
0.850x 1957 1.17 Gbp 1510 1.17 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 11 April 2024
bAnaCre1.alt.asm.20240411.fasta.gz (319.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 33 3.28 Mbp 33 3.28 Mbp
20 83 2.42 Mbp 83 2.42 Mbp
30 150 1.79 Mbp 150 1.79 Mbp
40 237 1.38 Mbp 237 1.38 Mbp
50 351 1.06 Mbp 351 1.06 Mbp
60 505 0.75 Mbp 505 0.75 Mbp
70 739 450.46 Kbp 739 450.46 Kbp
80 1257 153.79 Kbp 1257 153.79 Kbp
90 5133 14.30 Kbp 5133 14.30 Kbp
100 0 0
0.917x 7529 1.26 Gbp 7529 1.26 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 11 April 2024
bAnaCre1.MT.20240411.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.