Anas platyrhynchos

mallard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAnaPla
  name: Anas platyrhynchos
  taxon_id: 8839
  common_name: mallard
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bAnaPla2
      biosample_id: SAMEA113398833
      sex: female
  genome_size: 1418100000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAnaPla2 70.82 Gbp 49.94x 22.6 GiB
Arima bAnaPla2 84.09 Gbp 59.30x 23.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.42 Gbp.
Last upload on 1 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAnaPla2 PacBio HiFi (.bam) 70.82 Gbp 49.94x 22.6 GiB
Arima 84.09 Gbp 59.30x 23.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.42 Gbp.
Last upload on 1 April 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 5 April 2024
bAnaPla2.hap1.asm.20240405.fasta.gz (320.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 9.54 Mbp 1 205.71 Mbp
20 31 6.72 Mbp 2 159.60 Mbp
30 54 5.22 Mbp 3 118.74 Mbp
40 86 3.91 Mbp 5 77.37 Mbp
50 126 3.04 Mbp 6 68.30 Mbp
60 180 2.29 Mbp 10 27.79 Mbp
70 253 1.63 Mbp 17 17.78 Mbp
80 376 0.76 Mbp 31 4.89 Mbp
90 1128 32.95 Kbp 616 36.61 Kbp
100 0 0
0.905x 1516 1.28 Gbp 998 1.28 Gbp
NG based on genome size 1.42 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 5 April 2024
bAnaPla2.hap2.asm.20240405.fasta.gz (292.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 7.20 Mbp 1 207.38 Mbp
20 37 5.88 Mbp 2 159.72 Mbp
30 64 4.59 Mbp 3 118.24 Mbp
40 98 3.68 Mbp 5 67.99 Mbp
50 142 2.96 Mbp 7 39.70 Mbp
60 202 1.87 Mbp 13 22.96 Mbp
70 299 1.08 Mbp 22 8.74 Mbp
80 615 132.66 Kbp 182 172.66 Kbp
90 0 0
100 0 0
0.814x 993 1.15 Gbp 524 1.15 Gbp
NG based on genome size 1.42 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 April 2024
bAnaPla2.MT.20240405.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.