Anser anser

domestic goose

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAnsAns
  name: Anser anser
  taxon_id: 8843
  common_name: domestic goose
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bAnsAns1
      biosample_id: SAMEA113398854
      sex: female
  genome_size: 1408320000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAnsAns1 62.49 Gbp 44.37x 18.3 GiB
Arima bAnsAns1 82.87 Gbp 58.84x 23.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.41 Gbp.
Last upload on 23 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAnsAns1 PacBio HiFi (.bam) 62.49 Gbp 44.37x 18.3 GiB
Arima 82.87 Gbp 58.84x 23.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.41 Gbp.
Last upload on 23 February 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 27 July 2024
bAnsAns1.hap1.cur.20240727.fasta.gz (360.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 18 6.36 Mbp 1 215.88 Mbp
20 43 4.89 Mbp 2 163.30 Mbp
30 75 3.87 Mbp 3 124.39 Mbp
40 115 3.10 Mbp 4 88.46 Mbp
50 166 2.33 Mbp 6 67.29 Mbp
60 235 1.79 Mbp 9 32.74 Mbp
70 334 1.15 Mbp 15 21.60 Mbp
80 491 0.67 Mbp 23 13.16 Mbp
90 899 155.00 Kbp 115 284.01 Kbp
100 0 0
0.933x 1749 1.31 Gbp 819 1.31 Gbp
NG based on genome size 1.41 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 27 July 2024
bAnsAns1.hap2.cur.20240727.fasta.gz (325.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 17 6.44 Mbp 1 216.68 Mbp
20 45 4.54 Mbp 2 163.51 Mbp
30 80 3.59 Mbp 3 123.55 Mbp
40 123 2.83 Mbp 4 79.41 Mbp
50 182 2.10 Mbp 7 40.74 Mbp
60 262 1.49 Mbp 11 25.14 Mbp
70 384 0.86 Mbp 18 15.75 Mbp
80 676 233.68 Kbp 60 0.61 Mbp
90 0 0
100 0 0
0.829x 1135 1.17 Gbp 381 1.17 Gbp
NG based on genome size 1.41 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 27 February 2024
bAnsAns1.MT.20240227.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.