Aplidium pallidum

Red sea pork

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: kaAplPall
  name: Aplidium pallidum
  taxon_id: 2980188
  common_name: Red sea pork
  order:
    name: Aplousobranchia
  family:
    name: Polyclinidae
  individuals:
    - short_name: kaAplPall1
      biosample_id: SAMEA112788962
      sex:
  genome_size: 437655000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) kaAplPall1 53.85 Gbp 123.05x 18.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 437.66 Mbp.
Last upload on 1 September 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
kaAplPall1 PacBio HiFi (.bam) 53.85 Gbp 123.05x 18.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 437.66 Mbp.
Last upload on 1 September 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 5 August 2025
kaAplPall1.pri.cur.20250805.fasta.gz (231.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 19.02 Mbp 1 63.68 Mbp
20 5 17.89 Mbp 2 61.04 Mbp
30 7 17.03 Mbp 3 60.49 Mbp
40 10 14.79 Mbp 3 60.49 Mbp
50 13 12.82 Mbp 4 60.26 Mbp
60 17 11.82 Mbp 5 57.71 Mbp
70 21 10.33 Mbp 6 56.05 Mbp
80 26 9.05 Mbp 6 56.05 Mbp
90 31 8.22 Mbp 7 47.84 Mbp
100 36 7.48 Mbp 8 42.26 Mbp
1.846x 244 0.81 Gbp 34 0.81 Gbp
NG based on genome size 437.66 Mbp.
Individual 1 Alternate Assembly
Version assembly_curated from 5 August 2025
kaAplPall1.alt.cur.20250805.fasta.gz (261.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 24 1.33 Mbp 24 1.33 Mbp
20 61 1.03 Mbp 61 1.03 Mbp
30 109 0.80 Mbp 109 0.80 Mbp
40 169 0.67 Mbp 169 0.67 Mbp
50 241 0.56 Mbp 241 0.56 Mbp
60 326 469.47 Kbp 326 469.80 Kbp
70 427 402.99 Kbp 426 403.41 Kbp
80 544 342.61 Kbp 544 342.61 Kbp
90 683 293.40 Kbp 682 293.46 Kbp
100 844 251.56 Kbp 843 251.81 Kbp
2.086x 8053 0.91 Gbp 8051 0.91 Gbp
NG based on genome size 437.66 Mbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.