Athene noctua

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAthNoc
  name: Athene noctua
  taxon_id: 126797
  common_name: 
  order:
    name: Strigiformes
  family:
    name: Strigidae
  individuals:
    - short_name: bAthNoc1
      biosample_id: SAMEA114594456
      sex:
  genome_size: 1633260000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAthNoc1 67.50 Gbp 41.33x 21.0 GiB
Arima bAthNoc1 168.57 Gbp 103.21x 47.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.63 Gbp.
Last upload on 15 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAthNoc1 PacBio HiFi (.bam) 67.50 Gbp 41.33x 21.0 GiB
Arima 168.57 Gbp 103.21x 47.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.63 Gbp.
Last upload on 15 April 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 16 April 2024
bAthNoc1.hap1.asm.20240416.fasta.gz (338.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 14 8.94 Mbp 1 264.71 Mbp
20 35 7.01 Mbp 2 169.49 Mbp
30 62 5.62 Mbp 3 91.26 Mbp
40 94 4.40 Mbp 5 86.33 Mbp
50 139 3.06 Mbp 7 50.48 Mbp
60 200 2.18 Mbp 13 24.51 Mbp
70 300 1.16 Mbp 22 12.16 Mbp
80 616 188.44 Kbp 186 263.19 Kbp
90 0 0
100 0 0
0.830x 1283 1.36 Gbp 795 1.36 Gbp
NG based on genome size 1.63 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 16 April 2024
bAthNoc1.hap2.asm.20240416.fasta.gz (334.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 16 8.15 Mbp 1 264.96 Mbp
20 39 6.49 Mbp 2 168.53 Mbp
30 66 5.49 Mbp 3 88.38 Mbp
40 101 3.91 Mbp 5 82.53 Mbp
50 148 3.02 Mbp 8 45.44 Mbp
60 212 2.12 Mbp 13 24.48 Mbp
70 315 1.13 Mbp 22 10.77 Mbp
80 0 0
90 0 0
100 0 0
0.799x 1281 1.30 Gbp 790 1.30 Gbp
NG based on genome size 1.63 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 16 April 2024
bAthNoc1.MT.20240416.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.