Barbus barbus

barbel

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fBarBab1: GCA_936440315.1 fBarBab1: GCA_936446605.1
ENA fBarBab1: GCA_936440315.1 fBarBab1: GCA_936446605.1
UCSC Genome Browser fBarBab1: GCA_936440315.1 fBarBab1: GCA_936446605.1

metadata.yaml (view) (edit on github)
species:
  short_name: fBarBab
  name: Barbus barbus
  taxon_id: 40830
  common_name: barbel
  order:
    name: Cypriniformes
  family:
    name: Cyprinidae
  individuals:
    - short_name: fBarBab1
      biosample_id: SAMEA13335783
      sex: male
    - short_name: fBarBab2
      biosample_id: SAMEA11296535
      sex: male
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 3.0 Linie29 (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fBarBab1 75.98 Gbp 47.94x 143.3 GiB
Arima fBarBab2 165.26 Gbp 104.27x 48.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.58 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fBarBab1 PacBio HiFi (.bam) 75.98 Gbp 47.94x 143.3 GiB
fBarBab2 Arima 165.26 Gbp 104.27x 48.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.58 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 28 March 2022
fBarBab1.pri.cur.20220328.fasta.gz (455.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 32.86 Mbp 3 42.98 Mbp
20 9 28.05 Mbp 7 35.83 Mbp
30 15 26.10 Mbp 11 33.25 Mbp
40 21 24.39 Mbp 16 31.82 Mbp
50 28 22.84 Mbp 21 31.51 Mbp
60 36 19.70 Mbp 26 30.98 Mbp
70 44 16.12 Mbp 32 29.29 Mbp
80 56 10.89 Mbp 37 28.24 Mbp
90 77 6.01 Mbp 43 26.28 Mbp
100 199 12.73 Kbp 91 12.73 Kbp
1.000x 200 1.58 Gbp 92 1.58 Gbp
NG based on genome size 1.58 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 28 March 2022
fBarBab1.alt.cur.20220328.fasta.gz (380.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 90 1.08 Mbp 90 1.08 Mbp
20 236 0.78 Mbp 235 0.78 Mbp
30 428 0.61 Mbp 427 0.61 Mbp
40 673 479.68 Kbp 672 479.68 Kbp
50 983 375.49 Kbp 982 376.24 Kbp
60 1382 293.17 Kbp 1381 293.17 Kbp
70 1899 218.62 Kbp 1898 218.62 Kbp
80 2647 140.93 Kbp 2646 140.93 Kbp
90 4088 55.81 Kbp 4087 55.81 Kbp
100 8034 6.37 Kbp 8033 6.37 Kbp
1.000x 8035 1.32 Gbp 8034 1.32 Gbp
NG based on genome size 1.58 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.