Branta leucopsis

barnacle goose

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bBraLeu
  name: Branta leucopsis
  taxon_id: 184711
  common_name: barnacle goose
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bBraLeu2
      biosample_id: SAMEA112468032
      sex: male
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY 2.0 Bengt Nyman (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bBraLeu1 62.56 Gbp N/A 111.9 GiB
PacBio HiFi (.bam) bBraLeu2 63.30 Gbp N/A 30.5 GiB
Bionano bBraLeu1 N/A N/A 2.7 GiB
Arima bBraLeu2 121.00 Gbp N/A 37.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 29 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bBraLeu1 PacBio CLR 62.56 Gbp N/A 111.9 GiB
Bionano N/A N/A 2.7 GiB
bBraLeu2 PacBio HiFi (.bam) 63.30 Gbp N/A 30.5 GiB
Arima 121.00 Gbp N/A 37.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 29 February 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 11 July 2025
bBraLeu2.hap1.cur.20250711.fasta.gz (367.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 5 23.70 Mbp 1 212.76 Mbp
20 12 16.05 Mbp 2 164.41 Mbp
30 22 12.07 Mbp 3 121.72 Mbp
40 35 9.13 Mbp 4 94.07 Mbp
50 51 6.99 Mbp 6 66.38 Mbp
60 76 4.33 Mbp 8 38.89 Mbp
70 115 2.84 Mbp 13 22.78 Mbp
80 178 1.62 Mbp 21 12.19 Mbp
90 300 0.74 Mbp 49 1.83 Mbp
100 1118 1.00 Kbp 693 1.00 Kbp
1.000x 1118 1.35 Gbp 693 1.35 Gbp
NG based on genome size .
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 11 July 2025
bBraLeu2.hap2.cur.20250711.fasta.gz (320.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 5 22.61 Mbp 1 211.13 Mbp
20 10 19.83 Mbp 2 165.52 Mbp
30 18 13.06 Mbp 2 165.52 Mbp
40 28 9.87 Mbp 3 121.91 Mbp
50 41 7.41 Mbp 4 78.72 Mbp
60 58 5.85 Mbp 6 41.10 Mbp
70 81 4.17 Mbp 10 24.36 Mbp
80 115 2.69 Mbp 15 20.14 Mbp
90 181 1.06 Mbp 24 7.50 Mbp
100 660 1.00 Kbp 385 1.00 Kbp
1.000x 660 1.14 Gbp 385 1.14 Gbp
NG based on genome size .
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 29 February 2024
bBraLeu2.MT.20240229.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.