Calonectris borealis

Cory's Shearwater

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bCalBor
  name: Calonectris borealis
  taxon_id: 1323832
  common_name: Cory's Shearwater
  order:
    name: Procellariiformes
  family:
    name: Procellariidae
  individuals:
    - short_name: bCalBor6
      biosample_id: SAMEA8228670
      sex: female
    - short_name: bCalBor7
      biosample_id: SAMEA114294356
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC0 1.0 Universal, Hobbyfotowiki (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bCalBor6 2.56 Gbp N/A 9.1 GiB
bCalBor7 79.21 Gbp N/A 25.7 GiB
Arima bCalBor6 124.86 Gbp N/A 58.4 GiB
bCalBor7 68.85 Gbp N/A 20.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bCalBor6 PacBio HiFi (.bam) 2.56 Gbp N/A 9.1 GiB
Arima 124.86 Gbp N/A 58.4 GiB
bCalBor7 PacBio HiFi (.bam) 79.21 Gbp N/A 25.7 GiB
Arima 68.85 Gbp N/A 20.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 5 March 2024.
Assemblies
Individual 7 Haplotype 1 Assembly
Version assembly_cambridge from 7 May 2024
bCalBor7.hap1.asm.20240507.fasta.gz (372.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 9.59 Mbp 1 220.46 Mbp
20 27 7.57 Mbp 2 171.96 Mbp
30 46 6.45 Mbp 3 129.08 Mbp
40 68 5.30 Mbp 4 86.33 Mbp
50 96 4.22 Mbp 5 86.02 Mbp
60 130 3.36 Mbp 7 44.95 Mbp
70 176 2.50 Mbp 11 27.92 Mbp
80 237 1.82 Mbp 16 23.81 Mbp
90 329 1.12 Mbp 25 7.82 Mbp
100 846 1.00 Kbp 380 1.00 Kbp
1.000x 846 1.31 Gbp 380 1.31 Gbp
NG based on genome size .
Individual 7 Haplotype 2 Assembly
Version assembly_cambridge from 7 May 2024
bCalBor7.hap2.asm.20240507.fasta.gz (361.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 10.52 Mbp 1 220.54 Mbp
20 25 7.67 Mbp 2 171.79 Mbp
30 43 6.37 Mbp 2 171.79 Mbp
40 66 4.96 Mbp 3 129.33 Mbp
50 94 4.10 Mbp 5 52.33 Mbp
60 128 3.27 Mbp 8 39.28 Mbp
70 172 2.49 Mbp 12 24.56 Mbp
80 230 1.83 Mbp 18 16.61 Mbp
90 317 1.17 Mbp 29 8.37 Mbp
100 784 1.00 Kbp 318 1.00 Kbp
1.000x 784 1.27 Gbp 318 1.27 Gbp
NG based on genome size .
Individual 7 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 May 2024
bCalBor7.MT.20240507.fasta.gz (5.7 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.