Carcharodon carcharias
great white shark
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | sCarCar2: GCA_017639515.1 | sCarCar2: GCA_017639455.1 |
ENA | sCarCar2: GCA_017639515.1 | sCarCar2: GCA_017639455.1 |
UCSC Genome Browser | sCarCar2: GCA_017639515.1 | sCarCar2: GCA_017639455.1 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 3.0 Terry Goss (wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 4.50 Gbp.
Last upload on 13 July 2020.
Coverage based on genome size 4.50 Gbp.
Last upload on 13 July 2020.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 4.50 Gbp.
Last upload on 13 July 2020.
Coverage based on genome size 4.50 Gbp.
Last upload on 13 July 2020.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 5 February 2021
sCarCar2.pri.cur.20210205.fasta.gz (1.1 GiB)
Quality: 54.9 errors/Mb (QV=42.61)
Version assembly_curated from 5 February 2021
sCarCar2.pri.cur.20210205.fasta.gz (1.1 GiB)
Quality: 54.9 errors/Mb (QV=42.61)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 11 | 31.74 Mbp | 1 | 239.77 Mbp |
20 | 29 | 19.42 Mbp | 3 | 205.64 Mbp |
30 | 57 | 12.96 Mbp | 5 | 199.47 Mbp |
40 | 100 | 9.05 Mbp | 8 | 173.48 Mbp |
50 | 162 | 5.93 Mbp | 11 | 153.34 Mbp |
60 | 258 | 3.77 Mbp | 14 | 137.46 Mbp |
70 | 416 | 2.13 Mbp | 17 | 118.54 Mbp |
80 | 738 | 0.95 Mbp | 22 | 54.60 Mbp |
90 | 1536 | 310.15 Kbp | 37 | 9.48 Mbp |
100 | 0 | 0 | ||
0.948x | 3363 | 4.27 Gbp | 718 | 4.29 Gbp |
NG based on genome size 4.50 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 5 February 2021
sCarCar2.alt.cur.20210205.fasta.gz (1.5 MiB)
Quality: not computed
Version assembly_curated from 5 February 2021
sCarCar2.alt.cur.20210205.fasta.gz (1.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 0 | 0 | ||
20 | 0 | 0 | ||
30 | 0 | 0 | ||
40 | 0 | 0 | ||
50 | 0 | 0 | ||
60 | 0 | 0 | ||
70 | 0 | 0 | ||
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.001x | 67 | 6.20 Mbp | 39 | 6.21 Mbp |
NG based on genome size 4.50 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
sCarCar2.MT.20191004.fasta.gz (5.0 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 4 October 2019
sCarCar2.MT.20191004.fasta.gz (5.0 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.