Cervus elaphus

red deer

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mCerEla1: GCA_910594005.1 mCerEla1: GCA_910593805.1
ENA mCerEla1: GCA_910594005.1 mCerEla1: GCA_910593805.1
UCSC Genome Browser mCerEla1: GCA_910594005.1 mCerEla1: GCA_910593805.1

metadata.yaml (view) (edit on github)
species:
  short_name: mCerEla
  name: Cervus elaphus
  taxon_id: 9860
  common_name: red deer
  order:
    name: Artiodactyla
  family:
    name: Cervidae
  individuals:
    - short_name: mCerEla1
      biosample_id: SAMEA7523520
      sex: female
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 4.0 Sharp Photography (wikipedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mCerEla1 96.21 Gbp 33.33x 82.4 GiB
10x mCerEla1 123.07 Gbp 42.63x 72.6 GiB
Arima mCerEla1 461.54 Gbp 159.89x 225.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.89 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mCerEla1 PacBio HiFi (.bam) 96.21 Gbp 33.33x 82.4 GiB
10x 123.07 Gbp 42.63x 72.6 GiB
Arima 461.54 Gbp 159.89x 225.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.89 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 15 June 2021
mCerEla1.pri.cur.20210615.fasta.gz (777.6 MiB)

Quality: 2.8 errors/Mb (QV=55.49)

Contigs Scaffolds
NG LG Len LG Len
10 2 106.38 Mbp 1 140.94 Mbp
20 5 89.89 Mbp 3 125.77 Mbp
30 8 82.66 Mbp 6 103.26 Mbp
40 12 72.18 Mbp 9 94.14 Mbp
50 16 68.74 Mbp 12 83.47 Mbp
60 21 57.42 Mbp 16 72.18 Mbp
70 26 52.23 Mbp 20 65.07 Mbp
80 32 42.28 Mbp 25 55.77 Mbp
90 40 22.82 Mbp 30 51.85 Mbp
100 184 16.35 Kbp 144 16.35 Kbp
1.000x 185 2.89 Gbp 145 2.89 Gbp
NG based on genome size 2.89 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 15 June 2021
mCerEla1.alt.cur.20210615.fasta.gz (729.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 32 6.79 Mbp 32 6.79 Mbp
20 86 4.61 Mbp 86 4.61 Mbp
30 158 3.58 Mbp 158 3.59 Mbp
40 253 2.75 Mbp 252 2.77 Mbp
50 370 2.24 Mbp 368 2.26 Mbp
60 517 1.72 Mbp 514 1.75 Mbp
70 710 1.31 Mbp 705 1.34 Mbp
80 975 0.91 Mbp 964 0.92 Mbp
90 1397 485.84 Kbp 1380 492.94 Kbp
100 4042 4.53 Kbp 4020 4.53 Kbp
1.000x 4043 2.90 Gbp 4021 2.90 Gbp
NG based on genome size 2.89 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.