Chelmon rostratus

copperband butterflyfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fCheRos1: GCA_017976325.1 fCheRos1: GCA_017976315.1
ENA fCheRos1: GCA_017976325.1 fCheRos1: GCA_017976315.1
UCSC Genome Browser fCheRos1: GCA_017976325.1 fCheRos1: GCA_017976315.1

metadata.yaml (view) (edit on github)
species:
  name: Chelmon rostratus
  individuals:
  - short_name: fCheRos1
  short_name: fCheRos
  taxon_id: 109905
  common_name: copperband butterflyfish
  genome_size: 734000000
  genome_size_method: GoAT
  order:
    name: Chaetodontiformes
  family:
    name: Chaetodontidae
  project: [ vgp ]
CC BY-SA 2.0 Ruben Undheim (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fCheRos1 106.15 Gbp 144.62x 183.5 GiB
10x fCheRos1 94.09 Gbp 128.18x 46.5 GiB
Bionano fCheRos1 N/A 1688.95x 1.9 GiB
Arima fCheRos1 108.64 Gbp 148.01x 64.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.73 Gbp.
Last upload on 3 December 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fCheRos1 PacBio CLR 106.15 Gbp 144.62x 183.5 GiB
10x 94.09 Gbp 128.18x 46.5 GiB
Bionano N/A 1688.95x 1.9 GiB
Arima 108.64 Gbp 148.01x 64.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.73 Gbp.
Last upload on 3 December 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 March 2021
fCheRos1.pri.cur.20210324.fasta.gz (188.4 MiB)

Quality: 1.5 errors/Mb (QV=58.19)

Contigs Scaffolds
NG LG Len LG Len
10 2 26.88 Mbp 2 31.28 Mbp
20 5 24.31 Mbp 4 30.51 Mbp
30 8 19.94 Mbp 7 29.40 Mbp
40 12 17.67 Mbp 9 29.00 Mbp
50 17 15.11 Mbp 12 27.56 Mbp
60 22 13.07 Mbp 14 26.53 Mbp
70 28 10.07 Mbp 17 24.98 Mbp
80 41 3.47 Mbp 20 23.18 Mbp
90 0 0
100 0 0
0.878x 88 0.64 Gbp 28 0.64 Gbp
NG based on genome size 0.73 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 24 March 2021
fCheRos1.alt.cur.20210324.fasta.gz (176.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 48 1.13 Mbp 48 1.13 Mbp
20 126 0.81 Mbp 126 0.81 Mbp
30 230 0.62 Mbp 230 0.62 Mbp
40 364 484.86 Kbp 364 484.86 Kbp
50 541 357.56 Kbp 541 357.56 Kbp
60 788 247.75 Kbp 788 247.75 Kbp
70 1150 165.12 Kbp 1150 165.12 Kbp
80 1797 68.75 Kbp 1797 68.75 Kbp
90 0 0
100 0 0
0.820x 2126 0.60 Gbp 2125 0.60 Gbp
NG based on genome size 0.73 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 1 October 2019
fCheRos1.MT.20191001.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.