Clavelina lepadiformis

light-bulb sea squirt

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank kaClaLepa1: GCA_947623445.1 kaClaLepa1: GCA_947623165.1
ENA kaClaLepa1: GCA_947623445.1 kaClaLepa1: GCA_947623165.1
UCSC Genome Browser kaClaLepa1: GCA_947623445.1 kaClaLepa1: GCA_947623165.1

metadata.yaml (view) (edit on github)
species:
  short_name: kaClaLepa
  name: Clavelina lepadiformis
  taxon_id: 159417
  common_name: light-bulb sea squirt
  order:
    name: Aplousobranchia
  family:
    name: Clavelinidae
  individuals:
    - short_name: kaClaLepa1
      biosample_id: SAMEA7536527
      sex:
    - short_name: kaClaLepa3
      biosample_id: SAMEA7536558
      sex:
  genome_size: 437655000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY 4.0 Bernard Picton (iNaturalist)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) kaClaLepa1 25.21 Gbp 57.61x 88.4 GiB
Arima kaClaLepa3 177.53 Gbp 405.64x 50.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 437.66 Mbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
kaClaLepa1 PacBio HiFi (.bam) 25.21 Gbp 57.61x 88.4 GiB
kaClaLepa3 Arima 177.53 Gbp 405.64x 50.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 437.66 Mbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 9 March 2023
kaClaLepa1.pri.cur.20230309.fasta.gz (53.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 11.73 Mbp 2 26.54 Mbp
20 8 9.25 Mbp 4 25.07 Mbp
30 13 7.68 Mbp 6 20.77 Mbp
40 22 3.46 Mbp 8 19.51 Mbp
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.480x 161 210.08 Mbp 103 210.09 Mbp
NG based on genome size 437.66 Mbp.
Individual 1 Alternate Assembly
Version assembly_curated from 9 March 2023
kaClaLepa1.alt.cur.20230309.fasta.gz (34.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 20 1.66 Mbp 20 1.66 Mbp
20 62 0.60 Mbp 62 0.60 Mbp
30 282 60.11 Kbp 282 60.11 Kbp
40 0 0
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.321x 539 140.34 Mbp 539 140.34 Mbp
NG based on genome size 437.66 Mbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.