Columba palumbus

Wood Pigeon

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bColPal
  name: Columba palumbus
  taxon_id: 8934
  common_name: Wood Pigeon
  order:
    name: Columbiformes
  family:
    name: Columbidae
  individuals:
    - short_name: bColPal1
      biosample_id: SAMEA113398963
      sex: male
  genome_size: 1442550000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bColPal1 40.97 Gbp 28.40x 12.1 GiB
Arima bColPal1 48.77 Gbp 33.81x 14.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.44 Gbp.
Last upload on 1 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bColPal1 PacBio HiFi (.bam) 40.97 Gbp 28.40x 12.1 GiB
Arima 48.77 Gbp 33.81x 14.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.44 Gbp.
Last upload on 1 April 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 10 May 2024
bColPal1.pri.asm.20240510.fasta.gz (366.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 11.06 Mbp 1 214.68 Mbp
20 28 7.29 Mbp 2 165.44 Mbp
30 52 5.37 Mbp 3 125.11 Mbp
40 82 4.23 Mbp 4 83.31 Mbp
50 122 3.24 Mbp 6 72.55 Mbp
60 172 2.43 Mbp 10 27.48 Mbp
70 244 1.70 Mbp 16 21.21 Mbp
80 352 1.01 Mbp 33 3.63 Mbp
90 606 289.00 Kbp 198 373.00 Kbp
100 0 0
0.945x 1265 1.36 Gbp 769 1.36 Gbp
NG based on genome size 1.44 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 10 May 2024
bColPal1.alt.asm.20240510.fasta.gz (447.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 27 4.18 Mbp 27 4.18 Mbp
20 66 3.24 Mbp 66 3.24 Mbp
30 115 2.60 Mbp 115 2.60 Mbp
40 178 2.08 Mbp 178 2.08 Mbp
50 255 1.68 Mbp 255 1.68 Mbp
60 350 1.36 Mbp 350 1.36 Mbp
70 471 1.02 Mbp 471 1.02 Mbp
80 635 0.75 Mbp 635 0.75 Mbp
90 868 0.51 Mbp 868 0.51 Mbp
100 1226 316.49 Kbp 1226 316.49 Kbp
1.264x 6573 1.82 Gbp 6573 1.82 Gbp
NG based on genome size 1.44 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 10 May 2024
bColPal1.MT.20240510.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.