Dendropsophus ebraccatus

hourglass treefrog

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Maternal Assembly Paternal Assembly
GenBank aDenEbr1: GCA_027789725.1 aDenEbr1: GCA_027789765.1
ENA aDenEbr1: GCA_027789725.1 aDenEbr1: GCA_027789765.1
UCSC Genome Browser aDenEbr1: GCA_027789725.1 aDenEbr1: GCA_027789765.1

metadata.yaml (view) (edit on github)
species:
  common_name: hourglass treefrog
  family:
    name: Hylidae
  genome_size: 2520000000
  genome_size_method: null
  individuals:
  - short_name: aDenEbr1
  name: Dendropsophus ebraccatus
  order:
    name: Anura
  short_name: aDenEbr
  taxon_id: 150705
  project: [ vgp ]
CC BY 2.0 Brian Gratwicke (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR aDenEbr1 176.38 Gbp 69.99x 304.8 GiB
10x aDenEbr1 140.98 Gbp 55.95x 70.3 GiB
Bionano aDenEbr1 N/A 177.92x 483.7 MiB
Arima aDenEbr1 180.40 Gbp 71.59x 98.0 GiB
Illumina aDenEbr1 158.27 Gbp 62.81x 75.9 GiB
aDenEbr4 199.29 Gbp 79.08x 100.1 GiB
aDenEbr5 170.24 Gbp 67.56x 84.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.52 Gbp.
Last upload on 14 July 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
aDenEbr1 PacBio CLR 176.38 Gbp 69.99x 304.8 GiB
10x 140.98 Gbp 55.95x 70.3 GiB
Bionano N/A 177.92x 483.7 MiB
Arima 180.40 Gbp 71.59x 98.0 GiB
Illumina 158.27 Gbp 62.81x 75.9 GiB
aDenEbr4 Illumina 199.29 Gbp 79.08x 100.1 GiB
aDenEbr5 Illumina 170.24 Gbp 67.56x 84.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.52 Gbp.
Last upload on 14 July 2020.
Assemblies
Individual 1 Maternal Assembly
Version assembly_curated from 17 December 2021
aDenEbr1.mat.decon.20211217.fasta.gz (614.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 7 27.07 Mbp 1 128.21 Mbp
20 18 19.33 Mbp 4 89.90 Mbp
30 34 14.85 Mbp 7 79.82 Mbp
40 52 11.95 Mbp 10 70.09 Mbp
50 77 8.86 Mbp 14 60.91 Mbp
60 113 5.75 Mbp 19 45.84 Mbp
70 173 2.90 Mbp 26 33.56 Mbp
80 351 0.58 Mbp 40 8.03 Mbp
90 0 470 96.56 Kbp
100 0 0
0.889x 3357 2.24 Gbp 2569 2.35 Gbp
NG based on genome size 2.52 Gbp.
Individual 1 Paternal Assembly
Version assembly_curated from 17 December 2021
aDenEbr1.pat.cur.20211217.fasta.gz (595.5 MiB)

Quality: 162.0 errors/Mb (QV=37.91)

Contigs Scaffolds
NG LG Len LG Len
10 8 24.92 Mbp 1 219.87 Mbp
20 20 18.69 Mbp 2 202.06 Mbp
30 34 15.42 Mbp 3 171.95 Mbp
40 54 10.61 Mbp 5 153.44 Mbp
50 84 7.20 Mbp 6 149.80 Mbp
60 127 4.74 Mbp 8 121.95 Mbp
70 197 2.57 Mbp 11 93.52 Mbp
80 395 0.55 Mbp 14 75.85 Mbp
90 0 0
100 0 0
0.876x 3004 2.21 Gbp 2200 2.21 Gbp
NG based on genome size 2.52 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller_nanopore from 22 April 2021
aDenEbr1.MT.20210422.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.